Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017131.1 Corchorus olitorius cultivar O-4 contig17164, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24080

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1288--1326
20
1.9
21
89
5
62
5
17
0
76
0.96
3088--3129
20
2.1
20
95
0
75
52
7
19
21
1.69
9174--9248
24
3.1
24
86
5
98
56
0
17
26
1.42
11875--12000
8
16.6
7
67
21
51
50
5
0
42
1.31
11876--11919
15
2.9
15
83
12
54
54
2
2
40
1.25
11938--11990
21
2.4
23
84
12
76
54
3
0
41
1.18
12044--12119
3
25.3
3
77
10
75
60
3
0
35
1.15
12377--12540
86
1.9
87
93
3
287
31
22
14
31
1.94
13798--13841
5
8.8
5
87
0
61
11
61
6
20
1.52
13798--13841
15
2.9
15
100
0
88
11
61
6
20
1.52
21157--21390
129
1.8
129
88
2
362
46
5
19
29
1.71
21390--21421
2
16.0
2
100
0
64
50
0
0
50
1.00
22926--22960
13
2.8
12
91
8
61
40
8
0
51
1.33

Tables:   1

The End!