Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017132.1 Corchorus olitorius cultivar O-4 contig17165, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2058
ACGTcount: A:0.32, C:0.14, G:0.19, T:0.34


Found at i:1580 original size:14 final size:14

Alignment explanation


    Indices: 1542--1584  Score: 50
    Period size: 14  Copynumber: 3.1  Consensus size: 14

       1532 CTTCTCCTTT

                     *    
       1542 AATCGGTAAATTCC
          1 AATCGGTAATTTCC

               ** *       
       1556 AATATGCAATTTCC
          1 AATCGGTAATTTCC

                          
       1570 AATCGGTAATTTCC
          1 AATCGGTAATTTCC

             
       1584 A
          1 A

       1585 GGTATTTGTG


Statistics
Matches: 22,  Mismatches: 7, Indels: 0
        0.76            0.24        0.00

Matches are distributed among these distances:
  14   22  1.00

ACGTcount: A:0.35, C:0.21, G:0.12, T:0.33


Consensus pattern (14 bp):   
AATCGGTAATTTCC
Done.