Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017142.1 Corchorus olitorius cultivar O-4 contig17175, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17139
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30


Found at i:5911 original size:2 final size:2

Alignment explanation


    Indices: 5904--5935  Score: 55
    Period size: 2  Copynumber: 15.5  Consensus size: 2

       5894 TAATAAACAA

                                                           
       5904 AT AT AT AT AT AT AT AT AT AT AT AT ACT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT A

       5936 CTAAATATTA


Statistics
Matches: 29,  Mismatches: 0, Indels: 2
        0.94            0.00        0.06

Matches are distributed among these distances:
   2   27  0.93
   3    2  0.07

ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47


Consensus pattern (2 bp):   
AT

Done.