Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017143.1 Corchorus olitorius cultivar O-4 contig17176, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 959

Length: 1599
ACGTcount: A:0.33, C:0.21, G:0.12, T:0.34


Found at i:85 original size:21 final size:22

Alignment explanation


    Indices: 17--160  Score: 77
    Period size: 22  Copynumber: 6.6  Consensus size: 22

          7 TATTTTTATG

                                   
         17 AAATTTTGATAACTACCCTATTA
          1 AAATTTTGATAACTACCCTA-TA

                         * * *   *
         40 AAA-TTTGATAACCATCATATG
          1 AAATTTTGATAACTACCCTATA

                  *     *         
         61 AAATTTCGATAATTA-CCTATA
          1 AAATTTTGATAACTACCCTATA

                                   
         82 AAATTTTGATAA--ACTCC-ATA
          1 AAATTTTGATAACTAC-CCTATA

                               *    *
        102 AGAATCTTTGATAACCTA-ACTATG
          1 A-AAT-TTTGATAA-CTACCCTATA

                   *       **     *
        126 AAATTTTAATAAACTTTCCTATG
          1 AAATTTTGAT-AACTACCCTATA

                         
        149 AAATTTTG-TAAC
          1 AAATTTTGATAAC

        161 CTTCCTATGA


Statistics
Matches: 94,  Mismatches: 16, Indels: 24
        0.70            0.12        0.18

Matches are distributed among these distances:
  19    1  0.01
  20    4  0.04
  21   27  0.29
  22   37  0.39
  23   21  0.22
  24    3  0.03
  25    1  0.01

ACGTcount: A:0.41, C:0.15, G:0.07, T:0.38


Consensus pattern (22 bp):   
AAATTTTGATAACTACCCTATA
Done.