Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017144.1 Corchorus olitorius cultivar O-4 contig17177, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28114

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
464--499
6
6.2
6
93
6
65
50
0
16
33
1.46
1487--1512
13
2.0
13
100
0
52
92
0
7
0
0.39
5216--7138
333
5.8
328
80
8
1600
37
14
14
33
1.87
7589--8420
342
2.5
331
80
7
955
37
14
13
34
1.86
8775--8804
15
1.9
16
93
6
53
53
3
0
43
1.17
8801--8830
14
2.2
14
94
5
53
63
0
0
36
0.95
8912--8958
20
2.3
20
85
7
60
63
6
8
21
1.44
13657--13700
21
2.1
20
83
8
52
72
4
18
4
1.19
18766--18801
18
2.0
18
94
0
63
25
5
33
36
1.79
20015--20057
20
2.2
20
95
0
77
18
9
32
39
1.83
20022--20067
20
2.3
20
88
0
65
19
13
30
36
1.90
20086--20171
41
2.1
41
95
4
156
31
11
25
31
1.91
20151--20192
21
2.0
21
100
0
84
38
4
33
23
1.76
20154--20199
21
2.2
21
88
0
65
39
6
32
21
1.79
22265--22298
17
2.0
17
100
0
68
11
23
17
47
1.81
22533--22756
47
4.8
44
79
9
241
12
29
21
37
1.89
22729--22790
29
2.1
29
96
0
115
9
37
12
40
1.77
22680--22833
77
2.0
77
92
0
254
10
31
18
39
1.85
22758--22977
47
4.7
46
85
5
273
9
28
20
41
1.84
22589--22930
169
2.0
168
83
6
433
10
30
20
38
1.86
22758--22972
92
2.3
94
85
4
292
9
28
20
40
1.85
22544--23100
216
2.6
216
91
2
881
10
29
20
39
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
22945--23006
29
2.1
29
87
0
88
9
35
11
43
1.73
22897--23048
76
2.0
76
92
0
250
9
32
18
39
1.84
22974--23100
47
2.7
47
93
1
211
9
29
20
40
1.84
27699--27759
26
2.4
25
89
5
95
31
26
0
42
1.55

Tables:   1

The End!