Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017157.1 Corchorus olitorius cultivar O-4 contig17190, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34932

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1976--2025
5
10.0
5
100
0
100
40
20
0
40
1.52
8867--9009
54
2.6
54
87
0
196
32
18
37
11
1.86
8873--9012
27
5.2
27
82
0
154
32
20
36
11
1.88
9700--9790
45
2.0
45
89
0
137
29
18
17
34
1.94
15897--15976
29
2.7
30
70
14
76
38
1
17
42
1.57
18603--18669
32
2.2
31
94
5
118
38
28
0
32
1.57
24194--24235
16
2.5
17
81
14
52
76
0
19
4
0.96
24478--24502
4
6.2
4
100
0
50
76
0
0
24
0.80
29206--29236
9
3.3
9
95
4
53
0
25
0
74
0.82
29191--29234
13
3.5
13
82
14
56
0
27
0
72
0.85
29369--29418
20
2.3
20
83
10
64
42
8
0
50
1.32
31327--31373
25
2.0
25
87
8
71
51
10
8
29
1.66
32603--32632
15
1.9
16
93
6
53
0
30
0
70
0.88
32915--33095
94
1.9
94
93
1
310
32
12
2
52
1.52
34314--34366
12
4.4
13
81
11
60
45
9
5
39
1.60

Tables:   1

The End!