Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017159.1 Corchorus olitorius cultivar O-4 contig17192, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 41440
ACGTcount: A:0.34, C:0.16, G:0.17, T:0.34
Found at i:21079 original size:17 final size:17
Alignment explanation
Indices: 21010--21082 Score: 50
Period size: 17 Copynumber: 4.4 Consensus size: 17
21000 TTTACTCTTT
21010 CTTTTATAATTTTTTCTA
1 CTTTTATAA-TTTTTCTA
*
21028 -TTTT-T-ATTTTATTTA
1 CTTTTATAATTTT-TCTA
*
21043 --TTTATATATTTGTT-TT
1 CTTTTATA-ATTT-TTCTA
21059 CTTTTATAATTTTTCTA
1 CTTTTATAATTTTTCTA
21076 CTTTTAT
1 CTTTTAT
21083 TTTATTTTAT
Statistics
Matches: 44, Mismatches: 3, Indels: 17
0.69 0.05 0.27
Matches are distributed among these distances:
14 7 0.16
15 5 0.11
16 4 0.09
17 21 0.48
18 7 0.16
ACGTcount: A:0.21, C:0.07, G:0.01, T:0.71
Consensus pattern (17 bp):
CTTTTATAATTTTTCTA
Found at i:21101 original size:6 final size:5
Alignment explanation
Indices: 21029--21107 Score: 54
Period size: 5 Copynumber: 14.8 Consensus size: 5
21019 TTTTTTCTAT
* * *
21029 TTTTA TTTTA -TTTA TTTATA TATTTG TTTTC TTTTA TAATTT- TTCTA
1 TTTTA TTTTA TTTTA TTT-TA T-TTTA TTTTA TTTTA T--TTTA TTTTA
21076 CTTTTA TTTTA TTTTA TTTATA TTTATA TTTT
1 -TTTTA TTTTA TTTTA TTT-TA TTT-TA TTTT
21108 TGTTTTATTA
Statistics
Matches: 61, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
4 6 0.10
5 29 0.48
6 21 0.34
7 5 0.08
ACGTcount: A:0.22, C:0.04, G:0.01, T:0.73
Consensus pattern (5 bp):
TTTTA
Found at i:21134 original size:53 final size:53
Alignment explanation
Indices: 21029--21141 Score: 126
Period size: 55 Copynumber: 2.2 Consensus size: 53
21019 TTTTTTCTAT
* * *
21029 TTTTATTTTATTTATTTATATATTTGTTTTCTTTTATAATTTTTCTACTTTTA
1 TTTTATTTTATTTATTTATATATTTGTTTTCATTAATAATTATTCTACTTTTA
* *
21082 TTTTATTTTATTTATATTTATATTTTTGTTTT-ATTAATGGATTATT-TA-TTTTA
1 TTTTATTTTA-TT-TATTTATATATTTGTTTTCATTAAT-AATTATTCTACTTTTA
21135 -TTTATTT
1 TTTTATTT
21142 GTTTTTTTTA
Statistics
Matches: 52, Mismatches: 5, Indels: 7
0.81 0.08 0.11
Matches are distributed among these distances:
52 7 0.13
53 15 0.29
54 8 0.15
55 22 0.42
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.72
Consensus pattern (53 bp):
TTTTATTTTATTTATTTATATATTTGTTTTCATTAATAATTATTCTACTTTTA
Found at i:22230 original size:29 final size:29
Alignment explanation
Indices: 22197--22264 Score: 73
Period size: 29 Copynumber: 2.3 Consensus size: 29
22187 ACTTGTAGCA
22197 TTTGGACGTTTTGTCCCCTAAACTTCAAT
1 TTTGGACGTTTTGTCCCCTAAACTTCAAT
* * * * * *
22226 TTTGGCCATTTTGTCCTCTGAAGTTCATT
1 TTTGGACGTTTTGTCCCCTAAACTTCAAT
22255 TTTGGGACGT
1 TTT-GGACGT
22265 GACAGCATCG
Statistics
Matches: 30, Mismatches: 8, Indels: 1
0.77 0.21 0.03
Matches are distributed among these distances:
29 26 0.87
30 4 0.13
ACGTcount: A:0.16, C:0.21, G:0.19, T:0.44
Consensus pattern (29 bp):
TTTGGACGTTTTGTCCCCTAAACTTCAAT
Found at i:23313 original size:52 final size:52
Alignment explanation
Indices: 23235--23334 Score: 173
Period size: 52 Copynumber: 1.9 Consensus size: 52
23225 GGTTACTTGT
*
23235 TTAAATAAGGGTCTAATATTTGTAAAAAAGCTCAAATAAGGTCTTAATTTGC
1 TTAAATAAGGGCCTAATATTTGTAAAAAAGCTCAAATAAGGTCTTAATTTGC
* *
23287 TTAAATAAGGGCCTAATGTTTGTAAAAAAGTTCAAATAAGGTCTTAAT
1 TTAAATAAGGGCCTAATATTTGTAAAAAAGCTCAAATAAGGTCTTAAT
23335 CATTTAATTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
52 45 1.00
ACGTcount: A:0.41, C:0.09, G:0.16, T:0.34
Consensus pattern (52 bp):
TTAAATAAGGGCCTAATATTTGTAAAAAAGCTCAAATAAGGTCTTAATTTGC
Found at i:23401 original size:60 final size:59
Alignment explanation
Indices: 23278--23450 Score: 159
Period size: 60 Copynumber: 2.9 Consensus size: 59
23268 AAATAAGGTC
* ** * * * **
23278 TTAATTTGCTTAAATAAGGGCCTAATGTTTGTAAAAAAGTTCAAATAAGGTCTTAATCAT
1 TTAATTTGC-TAAATAAGGACCTAATGTTTGCCAAAATGCTCAAATAAGGGCCCAATCAT
* * *
23338 TTAATTTGTCTAAATAAGGACCTAATGTTTACCAAAATGCTCAAATAAGGGCCCGATCTT
1 TTAATTTG-CTAAATAAGGACCTAATGTTTGCCAAAATGCTCAAATAAGGGCCCAATCAT
* * * * *
23398 TTAATTTGACCAAATAA-AAGCTTAACGTTTGCCAAGATGCTCAAATAAGGGCC
1 TTAATTTG-CTAAATAAGGA-CCTAATGTTTGCCAAAATGCTCAAATAAGGGCC
23451 TGACATCAAA
Statistics
Matches: 93, Mismatches: 18, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
59 1 0.01
60 91 0.98
61 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.16, T:0.32
Consensus pattern (59 bp):
TTAATTTGCTAAATAAGGACCTAATGTTTGCCAAAATGCTCAAATAAGGGCCCAATCAT
Found at i:27307 original size:649 final size:624
Alignment explanation
Indices: 26086--29684 Score: 1725
Period size: 645 Copynumber: 5.7 Consensus size: 624
26076 CGGGGTCTCA
* *
26086 ACTCAGTTTTGCATGGTTTTTGACATAAAGACTCCTTGAAATATCTATATTAATCTAACCAAATT
1 ACTCAGTTTTGCATGATTTTTGACATAAAGACTCCTTGAAATATC--TA-TAATCTAACCAAATC
* * *
26151 TCAGT-CACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCAATTTAATTAT
63 TCA-TCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
* * *
26215 AAA-TAATTTCGGGAAAAAAATAAAAAAACGATATTAGAAGCGTGAAAAACCCCTTCAATTTTTT
127 AAATTAA-TTCAGAAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAAA-CCCTTCAATTTTTT
* * * * *
26279 TG-GCATTAAATTATATATTATTTCGGAATATTGTGGTAAAAATTTGAGGAAATACTTTTTGGGT
190 TGTG--TTAAATTATATATTTTTTC-TAATATTGTGGAAAAAAATTGAGGAAA-ACATTTTGGGT
* * ** * *
26343 CAGTTTTTGTAAAATTTTAGTTGAAATCGTGTACGTCACAATTTTTGGCTAAAAACGCATTTCGG
251 CAGTTTTTGCAAAACTTTAGACGAAATCGTGTACATCACAATTTTTGGCTAAAAACGCATTCCGG
* * * * * * * *
26408 AGTCTCGGCTCAATTTTGCGTGATTTTTGACGTGAAGACTCCTTGAAATATTTATATTCATCGAA
316 AGCCCCGACTCAATTTTGCATAATTTTTGACGTAAAGACTCCTCGAAATATCTATATTCATCGAA
* * * * *
26473 TCAAATCTCAGCCACATTGGATATAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTT
381 TCAAATCTCAACCACATTGGATATAAAGATATGTTTTTACGAGCATCTGAAGCTTGTATCGATTT
* * * *
26538 AATTAGAAATTAATTCGGAAAAAAAGGAAAAACGATATTAGAAGTGTGAAAGGCCCGTCAATCTT
446 AATTAGAAATAAATTCGGAAAAAAAGCAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTT
* ** *
26603 TTTGACGTTGAATTATATATTTTTTCTTGAGTATCGTGGCAAAAAACTGAGAAAAA-ACTTTTCG
511 TTTGACGTTGAATTATATATTTTTTCTTGAGTATCGTGGCAAAAAACTCAGAAAAATAAATTTCA
* * *
26667 GGT-AAGTTTTTAGCCGAAATCGTGAACCATTACGGTTTTTCTCTAAAAACGCGTTTCGAGGCCC
576 GCTCAA-TTTTTAGCCGAAA---T---CC--T---G----TAT-TAAAAACGCGTTCCG-GGCCC
26731 C-
623 CG
*
26732 AGCTCAGTTTTGCGTGATTTTTGACATAAAGACTCCTTGAAATATCTATAATCTAACCAAATCTC
1 A-CTCAGTTTTGCATGATTTTTGACATAAAGACTCCTTGAAATATCTATAATCTAACCAAATCTC
* * *
26797 ATCCACAATAGATTTATGGATTTGTTTTTACGAGCATCTGAATATTGTTTCGATTTAATTAGAAA
65 ATCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAA
* *
26862 TTAATTCAGAACAAAAAATGAAAAAACGATAATAGAAGCGTGAAGAACCCTT-AATTCTTTTTGT
130 TTAATTCAGAA-AAAAAATGAAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATT-TTTTTGT
* *
26926 GTTGAATTATATATTTTTTCTAACTCTT-TGGCAAAAAAAAATTGAGGTAAAACATTTTGGGTCA
193 GTTAAATTATATATTTTTTCTAA-TATTGTGG---AAAAAAATTGAGG-AAAACATTTTGGGTCA
* ** * *
26990 GTTTTTGCAAAA-TTTAGCCGAAATCGTGAGCTAATCATCACGGTTTTTTGCTAAAAACGCGTTC
253 GTTTTTGCAAAACTTTAGACGAAATCGT--G-T-A-CATCACAATTTTTGGCTAAAAACGCATT-
* * *
27054 CCGG-GCCCCGACTCAGTTTTGCATAATTTTTGGCGTAAAGTCATCC-CGAAATATCTATATTCA
312 CCGGAGCCCCGACTCAATTTTGCATAATTTTTGACGTAAAGAC-TCCTCGAAATATCTATATTCA
* *
27117 TCGAA-CAAAATCTCAACCAGATTGGATTTAAAGATATGTTTTTACGAGCATCTGAAGCTTGTAT
376 TCGAATC-AAATCTCAACCACATTGGATATAAAGATATGTTTTTACGAGCATCTGAAGCTTGTAT
*
27181 CGATTTAATTAGAAATAAATTCGGAAAAAAAAAGCAAAAGCGATATTAGAAGCGTGAAAAAG-CC
440 CGATTTAATTAGAAATAAATTCGG--AAAAAAAGCAAAAACGATATTAGAAGCGTG-AAAAGCCC
* ** * *
27245 TTCAATCTTTTTGGTGTTGAATTATATATTTTTTC-TGAGTATTGTGGC-AAAAATTCAGAAAAA
502 GTCAATCTTTTTGACGTTGAATTATATATTTTTTCTTGAGTATCGTGGCAAAAAACTCAGAAAAA
27308 TAAATTTCAGCTCAATTTTTAGCCGAAATCCTGTATTAAAAACGCGTTCCGGGCCCCG
567 TAAATTTCAGCTCAATTTTTAGCCGAAATCCTGTATTAAAAACGCGTTCCGGGCCCCG
* * * * *
27366 ACTCAGTTTTGCATGATTTTT-AGCGTAAAGAATTCTTGAAATTTCTATATTCATCTAACTAAAT
1 ACTCAGTTTTGCATGATTTTTGA-CATAAAGACTCCTTGAAATATCTATA---ATCTAACCAAAT
* * * * * *
27430 CTCAGCCAGACTGGAGTTAAGGATTTATTTTTACGAGCATCTGAATCTTGTTTCGAATTAATTAG
62 CTCATCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
* * *
27495 AAATAAATTCA-AAAAAAATATGGAAAAACGATATTAGAAGCGTGAAAAAACCCTTCACTTTTTT
127 AAATTAATTCAGAAAAAAA-ATGAAAAAACGATATTAGAAGCGTG-AAAAACCCTTCAATTTTTT
* * * * * *
27559 GGGTGTTTAATTATATATTTTTTCTGATATTGTGGGAAAAAAATTGAGAAAAAAATTTTCGGCTC
190 -TGTGTTAAATTATATATTTTTTCTAATATTGT-GGAAAAAAATTGAGGAAAACATTTT-GGGTC
* * * *
27624 ATTTTTTGCAAAACTTTAGACGAAATCATAT-CATCACAGGTTTTT-GCTAAAAA--CA---C--
252 AGTTTTTGCAAAACTTTAGACGAAATCGTGTACATCACA-ATTTTTGGCTAAAAACGCATTCCGG
* * * * * * * *
27680 -GTCCCGGCTCAGTTTTGCATGAGTTTT-AGTGTAAATG-CAT-TTTGAAATATCTATATTCATC
316 AGCCCCGACTCAATTTTGCATAATTTTTGA-CGTAAA-GAC-TCCTCGAAATATCTATATTCATC
* * * * * *** * * * * * * *
27741 GAACCAAAT-TCTAGCCAAATTCGATTTTGCGATTTATTTTTACGAGCATTTGAATCTGGAAAAA
378 GAATCAAATCTC-AACCACATTGGATATAAAGATATGTTTTTACGAGCATCTGAAGCTTG--TAT
* ** ** * ** *
27805 CGA--T-ATT----ATAAGAGT--G-AAAAACCCTTCAATC--T-TT-TTAGCGTTGAATTA---
440 CGATTTAATTAGAAATAA-ATTCGGAAAAAAAGC-AAAAACGATATTAGAAGCG-TGAA-AAGCC
** * * * * * ** ** ** *
27853 TAT-ATTTTTTTATGA-GTATTGTAGCAAAAAAAATGAGAAAAAAATTTTCGGGAATGT-TTTTA
501 CGTCAATCTTTT-TGACG---T-T-G-------AAT--TATATATTTTTTCTTG-A-GTATCGTG
** *** * * * * ** * **** *
27915 GC-CGAAA-TC-GTGTACT-AA--TCATCACAGTTTTT-GCTAAAAACGC-GT-TTATGGGTCTC
549 GCAAAAAACTCAGAAAAATAAATTTCAGCTCAATTTTTAGCCGAAATC-CTGTATTA-AAAACGC
* ****
27971 GATTCAGTTTTCC-
612 G-TTCCGGGCCCCG
* *
27984 A-T--G----G--T--TTTTTGGCATAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAAC
1 ACTCAGTTTTGCATGATTTTTGACAT-AAAGACTCCTTGAAATATCTATA---ATCTAACCAAAT
* * * ** *
28038 CTTAACCACATTGGATTTAAGGATTTGTTTTTATAAGAATCTGAATCTTGTTTCGATTTAATTAG
62 CTCATCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
* * * * * * *
28103 AAGTAAATTC-G-GAAAAAATGGAAAAACGATATTAGAAACGTGAAAAATCCTTCAACTTTTTTG
127 AAATTAATTCAGAAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAAACCCTTCAA-TTTTTTT
* * * * * ** * *
28166 GCGTT-AATTATATAATTTTTTATGAGTGTAGTAGCCAAAAAATTGAGGAAAAACATTATCGGTC
191 GTGTTAAATTATAT-ATTTTTTCT-AATATTGT-GGAAAAAAATTGAGG-AAAACATTTTGGGTC
* * * * * ** *
28230 ATTTTTTTGCAAAATTTTAGCCGAAATCGTTTACTAACCATCACAGATTTGGCTAAAAACGCGTT
252 A-GTTTTTGCAAAACTTTAGACGAAATCGTGTAC--ATCA-CA-ATTTTTGGCTAAAAACGCATT
* * * * * * *
28295 CCGAAGCCCCGACTCAATTTTGCATTATTTTTGGCGCAAAGACTCTTTGAAATATCTATATTCAC
312 CCGGAGCCCCGACTCAATTTTGCATAATTTTTGACGTAAAGACTCCTCGAAATATCTATATTCAT
* * * * * * * * * *
28360 CGAACCAAATCTCAGCCACATTAGATACAAGGATTTGTTTTTACAAGCGTCTGAATCTTGTTTCG
377 CGAATCAAATCTCAACCACATTGGATATAAAGATATGTTTTTACGAGCATCTGAAGCTTGTATCG
* * * *
28425 ATTTAATTAGAAATTAATTCAGAAAAAAAATGGAAAAACGATATTAGATGCGTGAAAAGCCCGTC
442 ATTTAATTAGAAATAAATTC-GGAAAAAAA-GCAAAAACGATATTAGAAGCGTGAAAAGCCCGTC
* * ** * * * *
28490 AATCTTATTGGCAATGAATTACACATTTTTTC-TGAGTATTGTGGCAAAAGTA-TCAGAAAAA-A
505 AATCTTTTTGACGTTGAATTATATATTTTTTCTTGAGTATCGTGGCAAAA-AACTCAGAAAAATA
* *
28552 AATTTTCATGC-CAGA-TTTTAGACGAAATCGTGTACTAACCATCACGGTTTTTGGGCTAAAAAC
569 AA-TTTCA-GCTCA-ATTTTTAG-C-----C--G----AA--ATC-C--TGTAT----TAAAAAC
*
28615 GCCTTCCGGAG-CCCG
610 GCGTTCCGG-GCCCCG
* * * * *
28630 AGTCAATCTTGCATGATTTTTGACAGAAAGACTCCTTGAACTATCTATATTTATCTAACCAAATC
1 ACTCAGTTTTGCATGATTTTTGACATAAAGACTCCTTGAAATATCTATA---ATCTAACCAAATC
* * * * * * *
28695 TTAGCCACATTGGATTTTAA-GATTTGTTTTTACGAGCATCTGAAGCCTATTTCGATTTAATCAG
63 TCATCCACAATGGA-TTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAG
* * * * * * *
28759 AAATAAATTCCG-AAAAAAATGGAAAGACGATATTAGAAGCGTTAAAAACCATTCGATTTTTTTT
127 AAATTAATTCAGAAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAAACCCTTC-AATTTTTTT
* * * * *
28823 GCGTTGAATTATATATTTTTTATAACTGTTGTGGCAAAACAATTGAGGAAAA-AGTTTTCGGGTC
191 GTGTTAAATTATATATTTTTTCTAA-TATTGTGG-AAAAAAATTGAGGAAAACA-TTTT-GGGTC
* * * * * * *
28887 AGTTTTTGCAAAATTTTA-ACCGAAATCGTG-----CGC--TTTTTTGTTAGAACCGCCTTCCGG
252 AGTTTTTGCAAAACTTTAGA-CGAAATCGTGTACATCACAATTTTTGGCTAAAAACGCATTCCGG
* * * * * *
28944 -GGCCCTAGCTCAGTTTTGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATATTCATCGA
316 AGCCCCGA-CTCAATTTTGCATAATTTTTGACGTAAAGACTCCTCGAAATATCTATATTCATCGA
* * ** * * * * * *
29008 ACCAAATCCCAGGCACATTCGATTTAAGGAT-TAGTTTTTACGAGCATTTGAATCTTGTTTCGAT
380 ATCAAATCTCAACCACATTGGATATAAAGATAT-GTTTTTACGAGCATCTGAAGCTTGTATCGAT
* * * * * * *
29072 TTAATTAGAAATAAATTCAGAAAAAACCCTGGAAAAACAATATTAGAAGCATGAAAA-CTCTTCA
444 TTAATTAGAAATAAATTCGGAAAAAA---AGCAAAAACGATATTAGAAGCGTGAAAAGCCCGTCA
* * * * * * *
29136 ATATTTTTTG-CATTGAATTATATATTTTTT-ATGAGTATTGTGGTAAAAAAATGAG-AAAAT-A
506 AT-CTTTTTGACGTTGAATTATATATTTTTTCTTGAGTATCGTGGCAAAAAACTCAGAAAAATAA
** ** * *
29197 ATTGTGTG-TC-CGTTTTATCCGAAATCGGGTACTAACCATCACGGGTTTTGGCAAAAAAACGCG
570 ATT-TCAGCTCAATTTTTAGCCG-AA------A-T--CC-T-----GTATT-----AAAAACGCG
* *
29260 TTTCGGGGCCTCG
613 -TTCCGGGCCCCG
* * * * * * *
29273 CCTTAGTATTGCATGGTTTTTGGCATAAAGACTCCTTGAAATATCTATATTCAGCTAAACAAATC
1 ACTCAGTTTTGCATGATTTTTGACATAAAGACTCCTTGAAATATCTATA---ATCTAACCAAATC
* * * *
29338 TCAGCCACATTGGATTTAAGGATTTGTGTTTACGAGCATCTGAATCTTGTTTTGA-TT-ATTAGA
63 TCATCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGA
* * * * *
29401 AATAAATTC-GAAAAAAAAAG-AAAAATGATATTAGAAGCATGAAAAACCCTTCAATATTTTTGG
128 AATTAATTCAGAAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAAACCCTTCAAT-TTTTTTG
* * * * * *
29464 CGTTGAAATTATATA-TTTTT-T-ATGA--GT--------ATTGTGG-CAA-ATTTCGGATTAGT
192 TGTT-AAATTATATATTTTTTCTAAT-ATTGTGGAAAAAAATTGAGGAAAACATTTTGGGTCAGT
* * * * * *
29514 TTTTGCAAAATTTTAGCCGAAATCATGTACTCACCATCACGATTTTTGGCTAAAAACGCGTTTCA
255 TTTTGCAAAACTTTAGACGAAATC--GT-GT-A-CATCACAATTTTTGGCTAAAAACGC-ATTCC
* * ** * * *
29579 GG-GCCTCGACTCAGTTTTGCATGGTTTTTGGCATAAAAGACTCCTTGAAATATCTATATTCATC
314 GGAGCCCCGACTCAATTTTGCATAATTTTTGACGT-AAAGACTCCTCGAAATATCTATATTCATC
* * * * * *
29643 TAACCAAATCTCAGCCACATTGGATTTAAGGATTTGTTTTTA
378 GAATCAAATCTCAACCACATTGGATATAAAGATATGTTTTTA
29685 GTTTCATCTT
Statistics
Matches: 2306, Mismatches: 424, Indels: 455
0.72 0.13 0.14
Matches are distributed among these distances:
604 8 0.00
605 24 0.01
606 50 0.02
607 46 0.02
608 105 0.05
609 4 0.00
610 9 0.00
611 12 0.01
612 10 0.00
613 7 0.00
614 4 0.00
615 1 0.00
616 1 0.00
617 11 0.00
618 23 0.01
619 22 0.01
620 106 0.05
621 16 0.01
622 107 0.05
623 5 0.00
624 53 0.02
625 10 0.00
626 6 0.00
627 6 0.00
628 9 0.00
629 1 0.00
630 17 0.01
631 14 0.01
632 4 0.00
633 51 0.02
634 37 0.02
635 56 0.02
636 147 0.06
637 106 0.05
638 5 0.00
639 7 0.00
640 43 0.02
641 35 0.02
642 28 0.01
643 134 0.06
644 124 0.05
645 259 0.11
646 37 0.02
647 47 0.02
648 3 0.00
649 159 0.07
650 38 0.02
651 63 0.03
652 4 0.00
653 1 0.00
655 2 0.00
656 129 0.06
657 91 0.04
658 9 0.00
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35
Consensus pattern (624 bp):
ACTCAGTTTTGCATGATTTTTGACATAAAGACTCCTTGAAATATCTATAATCTAACCAAATCTCA
TCCACAATGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAAT
TAATTCAGAAAAAAAATGAAAAAACGATATTAGAAGCGTGAAAAACCCTTCAATTTTTTTGTGTT
AAATTATATATTTTTTCTAATATTGTGGAAAAAAATTGAGGAAAACATTTTGGGTCAGTTTTTGC
AAAACTTTAGACGAAATCGTGTACATCACAATTTTTGGCTAAAAACGCATTCCGGAGCCCCGACT
CAATTTTGCATAATTTTTGACGTAAAGACTCCTCGAAATATCTATATTCATCGAATCAAATCTCA
ACCACATTGGATATAAAGATATGTTTTTACGAGCATCTGAAGCTTGTATCGATTTAATTAGAAAT
AAATTCGGAAAAAAAGCAAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTGACGTTG
AATTATATATTTTTTCTTGAGTATCGTGGCAAAAAACTCAGAAAAATAAATTTCAGCTCAATTTT
TAGCCGAAATCCTGTATTAAAAACGCGTTCCGGGCCCCG
Found at i:27592 original size:302 final size:303
Alignment explanation
Indices: 27041--27630 Score: 825
Period size: 302 Copynumber: 1.9 Consensus size: 303
27031 GGTTTTTTGC
* *
27041 TAAAAACGCGTTCCCGGGCCCCGACTCAGTTTTGCATAATTTTTGGCGTAAAGTCATCCCGAAAT
1 TAAAAACGCGTTCCCGGGCCCCGACTCAGTTTTGCATAATTTTTAGCGTAAAGTAATCCCGAAAT
* * *
27106 ATCTATATTCATCGAACAAAATCTCAACCAGATTGGATTTAAAGATATGTTTTTACGAGCATCTG
66 ATCTATATTCATCGAACAAAATCTCAACCAGACTGGAGTTAAAGATATATTTTTACGAGCATCTG
* *
27171 AAGCTTGTATCGATTTAATTAGAAATAAATTCGGAAAAAAAAAGCAAAAGCGATATTAGAAGCGT
131 AAGCTTGTATCGAATTAATTAGAAATAAATTC-GAAAAAAAAAGCAAAAACGATATTAGAAGCGT
* *
27236 GAAAAAGCCTTCAATCTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGT-GG-CAAAAAT
195 GAAAAACCCTTCAATCTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGGAAAAAAAT
27299 TCAGAAAAATAAATTTCAGCTCAATTTTTAGCCGAAATCCTGTAT
260 TCAGAAAAA-AAATTTCAGCTCAATTTTTAGCCGAAATCCTGTAT
* **
27344 TAAAAACGCGTT-CCGGGCCCCGACTCAGTTTTGCATGATTTTTAGCGTAAAG-AATTCTTGAAA
1 TAAAAACGCGTTCCCGGGCCCCGACTCAGTTTTGCATAATTTTTAGCGTAAAGTAA-TCCCGAAA
* * * * * *
27407 TTTCTATATTCATCTAACTAAATCTCAGCCAGACTGGAGTTAAGGATTTATTTTTACGAGCATCT
65 TATCTATATTCATCGAACAAAATCTCAACCAGACTGGAGTTAAAGATATATTTTTACGAGCATCT
* * *
27472 GAATCTTGTTTCGAATTAATTAGAAATAAATTC-AAAAAAAATATGGAAAAACGATATTAGAAGC
130 GAAGCTTGTATCGAATTAATTAGAAATAAATTCGAAAAAAAA-A-GCAAAAACGATATTAGAAGC
* *
27536 GTGAAAAAACCCTTCACT-TTTTTGGGTGTTTAATTATATATTTTTTCTGA-TATTGTGGGAAAA
193 GTG-AAAAACCCTTCAATCTTTTT-GGTGTTGAATTATATATTTTTTCTGAGTATTGTGGGAAAA
* * * *
27599 AAATTGAGAAAAAAATTTTCGGCTCATTTTTT
256 AAATTCAGAAAAAAAATTTCAGCTCAATTTTT
27631 GCAAAACTTT
Statistics
Matches: 253, Mismatches: 27, Indels: 14
0.86 0.09 0.05
Matches are distributed among these distances:
300 8 0.03
301 2 0.01
302 162 0.64
303 67 0.26
304 14 0.06
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (303 bp):
TAAAAACGCGTTCCCGGGCCCCGACTCAGTTTTGCATAATTTTTAGCGTAAAGTAATCCCGAAAT
ATCTATATTCATCGAACAAAATCTCAACCAGACTGGAGTTAAAGATATATTTTTACGAGCATCTG
AAGCTTGTATCGAATTAATTAGAAATAAATTCGAAAAAAAAAGCAAAAACGATATTAGAAGCGTG
AAAAACCCTTCAATCTTTTTGGTGTTGAATTATATATTTTTTCTGAGTATTGTGGGAAAAAAATT
CAGAAAAAAAATTTCAGCTCAATTTTTAGCCGAAATCCTGTAT
Found at i:29047 original size:321 final size:320
Alignment explanation
Indices: 27797--29684 Score: 1447
Period size: 324 Copynumber: 5.8 Consensus size: 320
27787 CATTTGAATC
* * * *
27797 TGGAAAAACGATATTATAAGAGTGAAAAACCCTTCAATCTTTTTAGCGTTGAATTATATATTTTT
1 TGGAAAAACGATATTAGAAGCGTGAAAAA-CCTTCAATATTTTTGGCGTTGAATTATATA-TTTT
* * * * *
27862 TTATGAGTATTGTAGCAAAAAAAATGAGAAAAAAATTTTCGGG-AATGTTTTTAGCCGAAATCGT
64 TTATGAGTATTGTGGC-AAAAAATTGAGGAAAAAATTTTCGGGTCA-GTTTTT-G-CAAAAT-GT
* * * ** * * * *
27926 -GT-ACTAATCATC-ACAG-TTTTT-GCTAAAAACGCGTTTATGG-G-TCTCGATTCAGTTTTCC
124 ATTAACCAA--ATCGAC-GCTTTTTGGCTAAAAACGC-CTTCCGGAGCCCTAGACTCAGTTTTGC
* * * * *
27984 ATGGTTTTTTGGCATAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAACCTTAACCACAT
185 AT-GATTTTTGGCGT-AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACAT
** * *
28049 TGGATTTAAGGATTTGTTTTTATAAGAATCTGAATCTTGTTTCGATTTAATTAGAAGTAAATT-C
248 TGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCC
*
28113 GGAAAAAA
313 GAAAAAAA
*
28121 TGGAAAAACGATATTAGAAACGTGAAAAATCCTTCAACT-TTTTTGGCGTT-AATTATATAATTT
1 TGGAAAAACGATATTAGAAGCGTGAAAAA-CCTTCAA-TATTTTTGGCGTTGAATTATAT-ATTT
* * * * *
28184 TTTATGAGTGTAGTAGCCAAAAAATTGAGGAAAAACATTATC-GGTCATTTTTTTGCAAAAT-T-
63 TTTATGAGTATTGT-GGCAAAAAATTGAGGAAAAA-ATTTTCGGGTCA-GTTTTTGCAAAATGTA
* * * * * *
28246 TTAGCCGAAATCGTTTACTAACCATCACAGATTTGGCTAAAAACGCGTTCCGAAGCCC-CGACTC
125 TTAACC-AAATCG---AC---GC-T-----TTTTGGCTAAAAACGCCTTCCGGAGCCCTAGACTC
* * * * * *
28310 AATTTTGCATTATTTTTGGCGCAAAGACTCTTTGAAATATCTATATTCACCGAACCAAATCTCAG
177 AGTTTTGCATGATTTTTGGCGTAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAG
* ** * * *
28375 CCACATTAGATACAAGGATTTGTTTTTACAAGCGTCTGAATCTTGTTTCGATTTAATTAGAAATT
242 CCACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATA
*
28440 AATTCAGAAAAAAAA
307 AATTCCG-AAAAAAA
* * * * * ** * *
28455 TGGAAAAACGATATTAGATGCGTGAAAAGCCCGTCAATCTTATTGGCAATGAATTACACATTTTT
1 TGGAAAAACGATATTAGAAGCGTGAAAA-ACCTTCAATATTTTTGGCGTTGAATTATATATTTTT
* * * * ** * * *
28520 TCTGAGTATTGTGGC-AAAAGTATCAGAAAAAAAATTTTCATGCCAGATTTTAGACGAAATCGTG
65 TATGAGTATTGTGGCAAAAAAT-TGAG-GAAAAAATTTTCGGGTCAG-TTTTTG-C-AAA--ATG
* * * * *
28584 TACTAACC--ATC-ACGGTTTTTGGGCTAAAAACGCCTTCCGGAGCCC--GAGTCAATCTTGCAT
123 TATTAACCAAATCGACGCTTTTT-GGCTAAAAACGCCTTCCGGAGCCCTAGACTCAGTTTTGCAT
* * * *
28644 GATTTTTGACAG-AAAGACTCCTTGAACTATCTATATTTATCTAACCAAATCTTAGCCACATTGG
187 GATTTTTGGC-GTAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGG
* * * *
28708 ATTTTAA-GATTTGTTTTTACGAGCATCTGAAGCCTATTTCGATTTAATCAGAAATAAATTCCGA
251 A-TTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCCGA
28772 AAAAAA
315 AAAAAA
* * * * *
28778 TGGAAAGACGATATTAGAAGCGTTAAAAACCATTCGATTTTTTTTGCGTTGAATTATATATTTTT
1 TGGAAAAACGATATTAGAAGCGTGAAAAACC-TTCAATATTTTTGGCGTTGAATTATATATTTTT
* * * *
28843 TATAACTGTTGTGGCAAAACAATTGAGGAAAAAGTTTTCGGGTCAGTTTTTGCAAAAT-T-TTAA
65 TATGAGTATTGTGGCAAAA-AATTGAGGAAAAAATTTTCGGGTCAGTTTTTGCAAAATGTATTAA
* * * * * *
28906 CCGAAATCGTGCGCTTTTTTGTTAGAACCGCCTTCCGGGGCCCTAG-CTCAGTTTTGCATGATTT
129 CC-AAATCG-ACGCTTTTTGGCTAAAAACGCCTTCCGGAGCCCTAGACTCAGTTTTGCATGATTT
* * * *
28970 TTGGCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCCCAGGCACATTCGATTTAA
192 TTGGCGTAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAA
* * *
29035 GGATTAGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAACC
257 GGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCCGAAAAAA--
*
29100 C
320 A
* * * *
29101 TGGAAAAACAATATTAGAAGCATG-AAAACTCTTCAATATTTTTTGCATTGAATTATATATTTTT
1 TGGAAAAACGATATTAGAAGCGTGAAAAAC-CTTCAATATTTTTGGCGTTGAATTATATATTTTT
* * * * * * *
29165 TATGAGTATTGTGGTAAAAAAATGA-GAAAATAATTGT-GTGTCCGTTTTATCCGAAATCGGGTA
65 TATGAGTATTGTGGCAAAAAATTGAGGAAAA-AATTTTCGGGTCAGTTTT-TGCAAAAT---GTA
* ** * * * * * * * * *
29228 CTAACC--ATC-ACGGGTTTTGGCAAAAAAACGCGTTTCGG-GGCCTCGCCTTAGTATTGCATGG
125 TTAACCAAATCGACGCTTTTTGGC-TAAAAACGCCTTCCGGAGCCCTAGACTCAGTTTTGCATGA
* * *
29289 TTTTTGGCATAAAGACTCCTTGAAATATCTATATTCAGCTAAACAAATCTCAGCCACATTGGATT
189 TTTTTGGCGTAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATT
* *
29354 TAAGGATTTGTGTTTACGAGCATCTGAATCTTGTTTTGA-TT-ATTAGAAATAAATT-CGAAAAA
254 TAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCCGAAAAA
29416 AA
319 AA
** * *
29418 AAGAAAAATGATATTAGAAGCATGAAAAACCCTTCAATATTTTTGGCGTTGAAATTATATATTTT
1 TGGAAAAACGATATTAGAAGCGTGAAAAA-CCTTCAATATTTTTGGCGTTG-AATTATATATTTT
** ** * * *** * *
29483 TTATGAGTATTGTGGC---AAATTTCGG-ATTAGTTTT-TGCAAAATTTTAGCCGAAATCATGTA
64 TTATGAGTATTGTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCAGTTTTTG-C-AAA--ATGTA
* * * * * * *
29543 CTCACC--ATC-ACGATTTTTGGCTAAAAACGCGTTTCAGG-G-CCTCGACTCAGTTTTGCATGG
125 TTAACCAAATCGACGCTTTTTGGCTAAAAACGC-CTTCCGGAGCCCTAGACTCAGTTTTGCATGA
*
29603 TTTTTGGCATAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGAT
189 TTTTTGGCGT-AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGAT
29668 TTAAGGATTTGTTTTTA
253 TTAAGGATTTGTTTTTA
29685 GTTTCATCTT
Statistics
Matches: 1254, Mismatches: 235, Indels: 159
0.76 0.14 0.10
Matches are distributed among these distances:
314 36 0.03
315 103 0.08
316 12 0.01
317 22 0.02
318 25 0.02
319 39 0.03
320 61 0.05
321 158 0.13
322 181 0.14
323 146 0.12
324 183 0.15
325 30 0.02
326 6 0.00
328 1 0.00
329 1 0.00
332 103 0.08
333 28 0.02
334 99 0.08
335 8 0.01
336 3 0.00
337 3 0.00
338 1 0.00
339 1 0.00
340 4 0.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34
Consensus pattern (320 bp):
TGGAAAAACGATATTAGAAGCGTGAAAAACCTTCAATATTTTTGGCGTTGAATTATATATTTTTT
ATGAGTATTGTGGCAAAAAATTGAGGAAAAAATTTTCGGGTCAGTTTTTGCAAAATGTATTAACC
AAATCGACGCTTTTTGGCTAAAAACGCCTTCCGGAGCCCTAGACTCAGTTTTGCATGATTTTTGG
CGTAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGAT
TTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCCGAAAAAAA
Found at i:29173 original size:645 final size:641
Alignment explanation
Indices: 27796--29501 Score: 1901
Period size: 645 Copynumber: 2.6 Consensus size: 641
27786 GCATTTGAAT
* *
27796 CTGGAAAAACGATATTATAAG-AGTGAAAAACCCTTCAATCTTTTTAGCGTTGAATTATATATTT
1 CTGGAAAAACGATATTAGAAGCA-TG-AAAACCCTTCAATCTTTTTAGCATTGAATTATATA-TT
* * **
27860 TTTTATGAGTATTGTAGCAAAAAAAATGAGAAAAAAATTTTCGGGAATGTTTTTAGCCGAAATCG
63 TTTTATGAGTATTGTGGC-AAAAAAATGAGAAAAAAATTTTCTGCCA-G-TTTTAGCCGAAATCG
* * * * * * * * *
27925 TGTACTAATCATCACAGTTTTT-GCTAAAAACGCGTTTATGGGTCTCGATTCAGTTTTCCATGGT
125 TGTACTAACCATCACGGTTTTTGGCTAAAAACGC-CTTACGGG-CCCGACTCAGTATTGCAT-GA
* *
27989 TTTTTGGCATAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAACCTTAACCACATTGGAT
187 TTTTTGGCA-AAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTGGAT
** * * *
28054 TTAAGGATTTGTTTTTATAAGAATCTGAATCTTGTTTCGATTTAATTAGAAGTAAATTCGGAAAA
251 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAA
* *
28119 AATGGAAAAACGATATTAGAAACGTGAAAAATCCTTCAACTTTTTTGGCGTT-AATTATATAATT
316 AATGGAAAAACGATATTAGAAGCGTGAAAAA-CCTTCAATTTTTTTGGCGTTGAATTATAT-ATT
* * *
28183 TTTTATGAGTGTAGTAGCCAAAAAATTGAGGAAAAACATTATCGGTCATTTTTTTGCAAAATTTT
379 TTTTATGAGTGTTGT-GGCAAAAAATTGAGGAAAAACATTATCGGTCATGTTTTTGCAAAATTTT
* * *
28248 AGCCGAAATCGTTTACTAACCATCACAGATTTGGCTAAAAACGCGTTCCGAAGCCCCGACTCAAT
443 AACCGAAATCG-TTAC--ACCAT---A-ATTTGGCTAAAAACGCCTTCCGAAGCCCAGACTCAAT
* * *
28313 TTTGCATTATTTTTGGCGCAAAGACTCTTTGAAATATCTATATTCACCGAACCAAATCTCAGCCA
501 TTTGCATGATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCACCGAACCAAATCCCAGCCA
* * *
28378 CATTAGATACAAGGATTTGTTTTTACAAGCGTCTGAATCTTGTTTCGATTTAATTAGAAATTAAT
566 CATTAGATACAAGGATTAGTTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAAT
28443 TCAGAAAAAAA
631 TCAGAAAAAAA
* * * * * * * * *
28454 ATGGAAAAACGATATTAGATGCGTGAAAAGCCCGTCAATCTTATTGGCAATGAATTACACATTTT
1 CTGGAAAAACGATATTAGAAGCATGAAAA-CCCTTCAATCTTTTTAGCATTGAATTATATATTTT
* ** * *
28519 TTCTGAGTATTGTGGCAAAAGTATCAGAAAAAAAATTTTCATGCCAGATTTTAGACGAAATCGTG
65 TTATGAGTATTGTGGCAAAAAAATGAG-AAAAAAATTTTC-TGCCAG-TTTTAGCCGAAATCGTG
* * * *
28584 TACTAACCATCACGGTTTTTGGGCTAAAAACGCCTTCCGGAGCCCGAGTCAATCTTGCATGATTT
127 TACTAACCATCACGGTTTTT-GGCTAAAAACGCCTTACGG-GCCCGACTCAGTATTGCATGATTT
* * * *
28649 TTGACAGAAAGACTCCTTGAACTATCTATATTTATCTAACCAAATCTTAGCCACATTGGATTTTA
190 TTGGCAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTGGA-TTTA
* * * *
28714 A-GATTTGTTTTTACGAGCATCTGAAGCCTATTTCGATTTAATCAGAAATAAATTCCGAAAAAAA
254 AGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATT-CGAAAAAAA
* * * *
28778 TGGAAAGACGATATTAGAAGCGTTAAAAACCATTCGATTTTTTTTGCGTTGAATTATATATTTTT
318 TGGAAAAACGATATTAGAAGCGTGAAAAACC-TTCAATTTTTTTGGCGTTGAATTATATATTTTT
* * * *
28843 TATAACTGTTGTGGCAAAACAATTGAGGAAAAA-GTTTTCGGGTCA-GTTTTTGCAAAATTTTAA
382 TATGAGTGTTGTGGCAAAA-AATTGAGGAAAAACATTATC-GGTCATGTTTTTGCAAAATTTTAA
* * * * * * * ** *
28906 CCGAAATCG-TGC-GC-T-TTTTTGTTAGAACCGCCTTCCGGGGCCCTAG-CTCAGTTTTGCATG
445 CCGAAATCGTTACACCATAATTTGGCTAAAAACGCCTTCCGAAGCCC-AGACTCAATTTTGCATG
* * * *
28966 ATTTTTGGCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCCCAGGCACATTCGAT
509 ATTTTTGGCGCAAAGACTCCTTGAAATATCTATATTCACCGAACCAAATCCCAGCCACATTAGAT
** * *
29031 TTAAGGATTAGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAA
574 ACAAGGATTAGTTTTTACAAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAA
*
29096 AACC
639 AA-A
* * * *
29100 CTGGAAAAACAATATTAGAAGCATGAAAACTCTTCAATATTTTTTGCATTGAATTATATATTTTT
1 CTGGAAAAACGATATTAGAAGCATGAAAACCCTTCAATCTTTTTAGCATTGAATTATATATTTTT
* * * * * *
29165 TATGAGTATTGTGGTAAAAAAATGAGAAAATAATTGTGTGTCC-GTTTTATCCGAAATCGGGTAC
66 TATGAGTATTGTGGCAAAAAAATGAGAAAAAAATTTTCTG-CCAGTTTTAGCCGAAATCGTGTAC
* * * * * * *
29229 TAACCATCACGGGTTTTGGCAAAAAAACGCGTTTCGGGGCCTCGCCTTAGTATTGCATGGTTTTT
130 TAACCATCACGGTTTTTGGC-TAAAAACGCCTTAC-GGGCC-CGACTCAGTATTGCATGATTTTT
* * * *
29294 GGCATAAAGACTCCTTGAAATATCTATATTCAGCTAAACAAATCTCAGCCACATTGGATTTAAGG
192 GGCAAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTGGATTTAAGG
* * **
29359 ATTTGTGTTTACGAGCATCTGAATCTTGTTTTGA-TT-ATTAGAAATAAATTCGAAAAAAAAAGA
257 ATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGA
* * *
29422 AAAATGATATTAGAAGCATGAAAAACCCTTCAATATTTTTGGCGTTGAAATTATATATTTTTTAT
322 AAAACGATATTAGAAGCGTGAAAAA-CCTTCAATTTTTTTGGCGTTG-AATTATATATTTTTTAT
*
29487 GAGTATTGTGGCAAA
385 GAGTGTTGTGGCAAA
29502 TTTCGGATTA
Statistics
Matches: 880, Mismatches: 146, Indels: 61
0.81 0.13 0.06
Matches are distributed among these distances:
640 48 0.05
641 47 0.05
642 54 0.06
643 103 0.12
644 11 0.01
645 200 0.23
646 26 0.03
650 1 0.00
651 1 0.00
654 2 0.00
656 139 0.16
657 165 0.19
658 71 0.08
659 12 0.01
ACGTcount: A:0.34, C:0.15, G:0.17, T:0.34
Consensus pattern (641 bp):
CTGGAAAAACGATATTAGAAGCATGAAAACCCTTCAATCTTTTTAGCATTGAATTATATATTTTT
TATGAGTATTGTGGCAAAAAAATGAGAAAAAAATTTTCTGCCAGTTTTAGCCGAAATCGTGTACT
AACCATCACGGTTTTTGGCTAAAAACGCCTTACGGGCCCGACTCAGTATTGCATGATTTTTGGCA
AAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTTAGCCACATTGGATTTAAGGATTT
GTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCGAAAAAAATGGAAAAA
CGATATTAGAAGCGTGAAAAACCTTCAATTTTTTTGGCGTTGAATTATATATTTTTTATGAGTGT
TGTGGCAAAAAATTGAGGAAAAACATTATCGGTCATGTTTTTGCAAAATTTTAACCGAAATCGTT
ACACCATAATTTGGCTAAAAACGCCTTCCGAAGCCCAGACTCAATTTTGCATGATTTTTGGCGCA
AAGACTCCTTGAAATATCTATATTCACCGAACCAAATCCCAGCCACATTAGATACAAGGATTAGT
TTTTACAAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAA
Found at i:29311 original size:322 final size:319
Alignment explanation
Indices: 27797--29684 Score: 1737
Period size: 322 Copynumber: 5.8 Consensus size: 319
27787 CATTTGAATC
* * *
27797 TGGAAAAACGATATTATAAG-AGTGAAAAACCCTTCAATCTTTTTAGCGTTGAATTATATATTTT
1 TGGAAAAACGATATTAGAAGCA-TG-AAAACCCTTCAATATTTTTGGCGTTGAATTATATA-TTT
* * ***
27861 TTTATGAGTATTGTAGCAAAAAAAATGAGAAAAAAATTTTCGGGAATGTTTTTAGCCGAAATCGT
63 TTTATGAGTATTGTGGC-AAAAAAATGAG-AAAAAATTTTCGTGTCCG-TTTTAGCCGAAATCGT
* * *** * * * *
27926 GTACTAATCATCAC-AGTTTTTGCTAAAAACGCGTTTATGGGTCTCGATTCAGTTTTCCATGGTT
125 GTACTAACCATCACGAGTTTTGGCTAAAAACGCGTTCCGGGGCCTCGACTCAGTTTTGCAT-GAT
* * *
27990 TTTTGGCATAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAACCTTAACCACATTGGATT
189 TTTTGGCAT-AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATT
** * * *
28055 TAAGGATTTGTTTTTATAAGAATCTGAATCTTGTTTCGATTTAATTAGAAGTAAATTC-GGAAAA
253 TAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAA
28119 AA
318 AA
* * *
28121 TGGAAAAACGATATTAGAAACGTGAAAAATCCTTCAACT-TTTTTGGCGTT-AATTATATAATTT
1 TGGAAAAACGATATTAGAAGCATG-AAAACCCTTCAA-TATTTTTGGCGTTGAATTATAT-ATTT
* * * * * *
28184 TTTATGAGTGTAGTAGCCAAAAAATTGAGGAAAAACATTATCG-GTCATTTTTTTGCAAAATTTT
63 TTTATGAGTATTGT-GGCAAAAAAATGA-GAAAAA-ATTTTCGTGTC---------C---GTTTT
* * ** * *
28248 AGCCGAAATCGTTTACTAACCATCAC-AGATTTGGCTAAAAACGCGTTCCGAAGCCCCGACTCAA
113 AGCCGAAATCGTGTACTAACCATCACGAGTTTTGGCTAAAAACGCGTTCCGGGGCCTCGACTCAG
* ** * * *
28312 TTTTGCATTATTTTTGGCGCAAAGACTCTTTGAAATATCTATATTCACCGAACCAAATCTCAGCC
178 TTTTGCATGATTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCC
* ** * * *
28377 ACATTAGATACAAGGATTTGTTTTTACAAGCGTCTGAATCTTGTTTCGATTTAATTAGAAATTAA
243 ACATTGGATTTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAA
28442 TTCAGAAAAAAAA
308 TTCAG-AAAAAAA
* * * * * ** * *
28455 TGGAAAAACGATATTAGATGCGTGAAAAGCCCGTCAATCTTATTGGCAATGAATTACACATTTTT
1 TGGAAAAACGATATTAGAAGCATGAAAA-CCCTTCAATATTTTTGGCGTTGAATTATATATTTTT
* ** * * *
28520 TCTGAGTATTGTGGCAAAAGTATCAGAAAAAAAATTTTCATG-CCAGATTTTAGACGAAATCGTG
65 TATGAGTATTGTGGCAAAAAAAT--GAGAAAAAATTTTCGTGTCC-G-TTTTAGCCGAAATCGTG
* * * * *
28584 TACTAACCATCACG-GTTTTTGGGCTAAAAACGCCTTCCGGAGCC-CGAGTCAATCTTGCATGAT
126 TACTAACCATCACGAG-TTTT-GGCTAAAAACGCGTTCCGGGGCCTCGACTCAGTTTTGCATGAT
* * * * *
28647 TTTTGACAGAAAGACTCCTTGAACTATCTATATTTATCTAACCAAATCTTAGCCACATTGGATTT
189 TTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGA-TT
* * * * *
28712 TAA-GATTTGTTTTTACGAGCATCTGAAGCCTATTTCGATTTAATCAGAAATAAATTCCGAAAAA
253 TAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAA
28776 AA
318 AA
* * * * * * *
28778 TGGAAAGACGATATTAGAAGCGTTAAAAACCATTCGATTTTTTTTGCGTTGAATTATATATTTTT
1 TGGAAAAACGATATTAGAAGC-ATGAAAACCCTTCAATATTTTTGGCGTTGAATTATATATTTTT
* * * * * * * * *
28843 TATAACTGTTGTGGCAAAACAATTGAGGAAAAAGTTTTCGGGTCAGTTTTTG-CAAAAT--T-T-
65 TATGAGTATTGTGGCAAAA-AAATGA-GAAAAAATTTTCGTGTCCGTTTTAGCCGAAATCGTGTA
* ** * * * * * *
28903 -TAACCGAAATCGTGCGCTTTTTTGTTAGAACCGCCTTCCGGGGCC-CTAGCTCAGTTTTGCATG
128 CTAACC---ATC--ACGAGTTTTGGCTAAAAACGCGTTCCGGGGCCTCGA-CTCAGTTTTGCATG
* * * * *
28966 ATTTTTGGCGTAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCCCAGGCACATTCGAT
187 ATTTTTGGCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGAT
* *
29031 TTAAGGATTAGTTTTTACGAGCATTTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAA
252 TTAAGGATTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAA
*
29096 AACCC
317 AA--A
* * * *
29101 TGGAAAAACAATATTAGAAGCATGAAAACTCTTCAATATTTTTTGCATTGAATTATATATTTTTT
1 TGGAAAAACGATATTAGAAGCATGAAAACCCTTCAATATTTTTGGCGTTGAATTATATATTTTTT
* * * *
29166 ATGAGTATTGTGGTAAAAAAATGAGAAAATAATTGT-GTGTCCGTTTTATCCGAAATCGGGTACT
66 ATGAGTATTGTGGCAAAAAAATGAGAAAA-AATTTTCGTGTCCGTTTTAGCCGAAATCGTGTACT
* * * * * * *
29230 AACCATCACGGGTTTTGGCAAAAAAACGCGTTTCGGGGCCTCGCCTTAGTATTGCATGGTTTTTG
130 AACCATCACGAGTTTTGGC-TAAAAACGCGTTCCGGGGCCTCGACTCAGTTTTGCATGATTTTTG
* *
29295 GCATAAAGACTCCTTGAAATATCTATATTCAGCTAAACAAATCTCAGCCACATTGGATTTAAGGA
194 GCATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGA
* *
29360 TTTGTGTTTACGAGCATCTGAATCTTGTTTTGA-TT-ATTAGAAATAAATTC-GAAAAAAA
259 TTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAA
** *
29418 AAGAAAAATGATATTAGAAGCATGAAAAACCCTTCAATATTTTTGGCGTTGAAATTATATATTTT
1 TGGAAAAACGATATTAGAAGCATG-AAAACCCTTCAATATTTTTGGCGTTG-AATTATATATTTT
** ** * ** *
29483 TTATGAGTATTGTGGC--AAATTTCG-G-ATTAGTTTT--TG-CAAAATTTTAGCCGAAATCATG
64 TTATGAGTATTGTGGCAAAAAAAT-GAGAAAAAATTTTCGTGTC--CGTTTTAGCCGAAATCGTG
* * * * *
29541 TACTCACCATCACGATTTTTGGCTAAAAACGCGTTTCAGGGCCTCGACTCAGTTTTGCATGGTTT
126 TACTAACCATCACGAGTTTTGGCTAAAAACGCGTTCCGGGGCCTCGACTCAGTTTTGCATGATTT
29606 TTGGCATAAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTA
191 TTGGCAT-AAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTA
29671 AGGATTTGTTTTTA
255 AGGATTTGTTTTTA
29685 GTTTCATCTT
Statistics
Matches: 1272, Mismatches: 232, Indels: 129
0.78 0.14 0.08
Matches are distributed among these distances:
313 1 0.00
314 46 0.04
315 106 0.08
316 6 0.00
317 25 0.02
318 25 0.02
319 39 0.03
320 54 0.04
321 154 0.12
322 179 0.14
323 169 0.13
324 179 0.14
325 25 0.02
326 5 0.00
332 99 0.08
333 27 0.02
334 125 0.10
335 8 0.01
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.34
Consensus pattern (319 bp):
TGGAAAAACGATATTAGAAGCATGAAAACCCTTCAATATTTTTGGCGTTGAATTATATATTTTTT
ATGAGTATTGTGGCAAAAAAATGAGAAAAAATTTTCGTGTCCGTTTTAGCCGAAATCGTGTACTA
ACCATCACGAGTTTTGGCTAAAAACGCGTTCCGGGGCCTCGACTCAGTTTTGCATGATTTTTGGC
ATAAAGACTCCTTGAAATATCTATATTCATCTAACCAAATCTCAGCCACATTGGATTTAAGGATT
TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATAAATTCAGAAAAAAA
Found at i:30287 original size:326 final size:325
Alignment explanation
Indices: 29793--30951 Score: 1149
Period size: 326 Copynumber: 3.5 Consensus size: 325
29783 CAAAATTTTC
* * * *
29793 GCATCACGGTTTTTGGCTAAAAACGCATTCCGGAGTCCCAGCTCAA-TTTTGCATAATTTTTGGC
1 GCATCACGGTTTTTGGCTAAAAAGGCATTCCGGGGCCCCAGCT-AAGTTTTGCATGATTTTTGGC
* * * * *
29857 TCAAAGACTCCTTCAAATATCTATATTCATCGAATCAAATCTCAACCACATTGGATATAAGGATT
65 T-AAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGGATTTAAAGATT
* * * * *
29922 TGTTCTTACGAGCATATGAATCTCGTTTCGATTTAATTAGAAATTAATTTGG-AAAAAAGGGAAA
129 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATGGAAA
* * * *
29986 AACTAAGATTAGAAGCGTGAAAAGCCCGTCAATCTTTTTTGCGTTGAATTATATATTTTTTTCTG
194 AAC-GATATTAGAAGCGTGAAAAGCCCGTCAATATTTTTTGCGTTGAATTATATA-TTTTTTCTT
*
30051 AGTATTGTGGAAAAAAATTCAGAGAAAAAATTTCCGG-C-TTTAGT-TTTTAGTCC-AAACCGTG
257 AGTATTGTGGAAAAAAATT-AGAGAAAAAATTTCCGGTCATTTAGTATTTTA-ACCGAAACCGTG
30112 TACTAA
320 TACTAA
* * * *
30118 GCATCACGATTTTTGGGCTAAAAAGGCATTTCGGGGCCCCCGCTAAGTTTTGCATGATTTTTAGC
1 GCATCACGGTTTTT-GGCTAAAAAGGCATTCCGGGGCCCCAGCTAAGTTTTGCATGATTTTTGGC
* * * * * *
30183 ATAAAGACTCCCTGAGATATCTTTATTCATCTAACCAAATCTCTGCCACATTGGATTTAATGATT
65 -TAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGGATTTAAAGATT
* *
30248 TGTTTTTACGAGCATCTGAATCTTGTTTCGAATTAATTAGAAATAAATTCGGAAAAAAATGGAAA
129 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATGGAAA
* * *
30313 AACGATATTACAATCGTGACAAA--CCGTTCAATATTTTTTGCATTGAATTATATATTTTTTCTT
194 AACGATATTAGAAGCGTGA-AAAGCCCG-TCAATATTTTTTGCGTTGAATTATATATTTTTTCTT
* * * * *
30376 ACTATTGTGACAAAAAAAATT-GAGGAAAAATTTTTCGGGTCAAATTTTTGTAAAATTTTAACCG
257 AGTATTGTG--GAAAAAAATTAGA-GAAAAA-ATTTCCGGTC--A-TTTAGT---ATTTTAACCG
*
30440 AAATCGTGTACTAA
312 AAACCGTGTACTAA
* * * * * *
30454 CCAT-ATGGGTTTTT-GCTAAAAACGGGC--TCCGGGGCTCCGGCTTAGTTATGCATGATTTTTG
1 GCATCA-CGGTTTTTGGCTAAAAA--GGCATTCCGGGGCCCCAGCTAAGTTTTGCATGATTTTTG
* *
30515 GCGTAAAGACTTCTTGAAATATCTATATTCATCGAACCAAATCCCAGCCACATTGGATTTAAAGA
63 GC-TAAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGGATTTAAAGA
*
30580 TTTGTTTTTACGAGCATCTGAATCTTGTTTTGATTTAATTAGAAATTAATTCGGAAAAAAAATGG
127 TTTGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGG-AAAAAAATGG
*
30645 AAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATATTTTTGGCGTTGAATTATATATTTTTTCT
191 AAAAACGATATTAGAAGCGTGAAAAGCCCGTCAATATTTTTTGCGTTGAATTATATATTTTTTCT
* * ** * * **
30710 TAGTATTGTGGCAAAAAATTTGAGAAAAAACTTTTTAGGT-A---AGT-TTTTAGCCAAAATTGT
256 TAGTATTGTGGAAAAAAATTAGAGAAAAAA--TTTCCGGTCATTTAGTATTTTAACCGAAACCGT
30770 GTAC---
319 GTACTAA
* * *** * * * *** * ** * *
30774 G-TTCACAGTTTTTAATTAAAAACGCCTTCCGGGACCATGGTTCTGTTTAGCATGGTTTTTGGC-
1 GCATCACGGTTTTTGGCTAAAAAGGCATTCCGGGGCCCCAGCTAAGTTTTGCATGATTTTTGGCT
* * * * * *
30837 ACCGAGACTCCTTGAAATATCTTTATTAATCTAATCAAATCTCAGCCACATTGAATTTAAAGATT
66 A--AAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGGATTTAAAGATT
* * *
30902 TGTTTTTATGTGCATCTGAATCTTGTTTTGATTTAATTAGAAATTAATTC
129 TGTTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTC
30952 AAAAAATATG
Statistics
Matches: 698, Mismatches: 101, Indels: 75
0.80 0.12 0.09
Matches are distributed among these distances:
318 3 0.00
319 7 0.01
320 135 0.19
323 17 0.02
325 36 0.05
326 182 0.26
327 35 0.05
328 1 0.00
331 1 0.00
332 5 0.01
333 14 0.02
334 154 0.22
335 75 0.11
336 33 0.05
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (325 bp):
GCATCACGGTTTTTGGCTAAAAAGGCATTCCGGGGCCCCAGCTAAGTTTTGCATGATTTTTGGCT
AAAGACTCCTTGAAATATCTATATTCATCGAACCAAATCTCAGCCACATTGGATTTAAAGATTTG
TTTTTACGAGCATCTGAATCTTGTTTCGATTTAATTAGAAATTAATTCGGAAAAAAATGGAAAAA
CGATATTAGAAGCGTGAAAAGCCCGTCAATATTTTTTGCGTTGAATTATATATTTTTTCTTAGTA
TTGTGGAAAAAAATTAGAGAAAAAATTTCCGGTCATTTAGTATTTTAACCGAAACCGTGTACTAA
Found at i:31806 original size:32 final size:32
Alignment explanation
Indices: 31757--31841 Score: 134
Period size: 32 Copynumber: 2.7 Consensus size: 32
31747 ACAAAAATGT
* *
31757 GACGTGGCAATGTCACATCATCGGTTTGGTCT
1 GACGTGGCAATGCCACATCATCGGTTTGGTCC
* *
31789 GATGTTGCAATGCCACATCATCGGTTTGGTCC
1 GACGTGGCAATGCCACATCATCGGTTTGGTCC
31821 GACGTGGCAATGCCACATCAT
1 GACGTGGCAATGCCACATCAT
31842 AGGCATGAAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 47 1.00
ACGTcount: A:0.21, C:0.25, G:0.26, T:0.28
Consensus pattern (32 bp):
GACGTGGCAATGCCACATCATCGGTTTGGTCC
Found at i:31951 original size:29 final size:30
Alignment explanation
Indices: 31876--31953 Score: 95
Period size: 30 Copynumber: 2.6 Consensus size: 30
31866 ATCATTTGAG
*
31876 AGGGGACAAAACGTCCAAAATTGAGAGTTT
1 AGGGGACAAAACGTCCAAAATTGAGAGTTC
** **
31906 AGGGGGTAAAATATCCAAAATTGA-AGTTC
1 AGGGGACAAAACGTCCAAAATTGAGAGTTC
*
31935 AGGGGACAAAGCGTCCAAA
1 AGGGGACAAAACGTCCAAA
31954 CGCTACAAGT
Statistics
Matches: 38, Mismatches: 10, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
29 18 0.47
30 20 0.53
ACGTcount: A:0.41, C:0.14, G:0.27, T:0.18
Consensus pattern (30 bp):
AGGGGACAAAACGTCCAAAATTGAGAGTTC
Found at i:35044 original size:29 final size:30
Alignment explanation
Indices: 34994--35053 Score: 95
Period size: 29 Copynumber: 2.0 Consensus size: 30
34984 CTAATTAATG
*
34994 TATACATATAAATTATTCAATTTTATTATA
1 TATACATATAAATTATTCAATTATATTATA
*
35024 TATACATAT-AATTATTTAATTATATTATA
1 TATACATATAAATTATTCAATTATATTATA
35053 T
1 T
35054 TATTTATATA
Statistics
Matches: 28, Mismatches: 2, Indels: 1
0.90 0.06 0.03
Matches are distributed among these distances:
29 19 0.68
30 9 0.32
ACGTcount: A:0.43, C:0.05, G:0.00, T:0.52
Consensus pattern (30 bp):
TATACATATAAATTATTCAATTATATTATA
Found at i:35065 original size:18 final size:19
Alignment explanation
Indices: 35019--35066 Score: 55
Period size: 18 Copynumber: 2.5 Consensus size: 19
35009 TTCAATTTTA
*
35019 TTATATATACATATAATTAT
1 TTATATATA-TTATAATTAT
35039 TTA-ATTATATTAT-ATTAT
1 TTATA-TATATTATAATTAT
35057 TTATATATAT
1 TTATATATAT
35067 AACGGGTCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 13 0.52
19 5 0.20
20 7 0.28
ACGTcount: A:0.42, C:0.02, G:0.00, T:0.56
Consensus pattern (19 bp):
TTATATATATTATAATTAT
Found at i:40513 original size:31 final size:31
Alignment explanation
Indices: 40471--40531 Score: 104
Period size: 31 Copynumber: 2.0 Consensus size: 31
40461 ATTTGAGATT
40471 CCTAGTCTTCGAGGCATGTGGCATGCCTGAC
1 CCTAGTCTTCGAGGCATGTGGCATGCCTGAC
* *
40502 CCTAGTTTTCGAGGCATGTGGTATGCCTGA
1 CCTAGTCTTCGAGGCATGTGGCATGCCTGA
40532 TCCTGGACTG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.16, C:0.25, G:0.30, T:0.30
Consensus pattern (31 bp):
CCTAGTCTTCGAGGCATGTGGCATGCCTGAC
Done.