Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017160.1 Corchorus olitorius cultivar O-4 contig17193, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68937

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4165--4204
21
1.9
21
100
0
80
35
20
7
37
1.81
19512--19546
11
3.2
11
83
0
52
77
17
5
0
0.96
19931--20034
34
3.1
34
100
0
208
25
28
14
31
1.95
21734--21773
20
2.0
20
100
0
80
30
10
20
40
1.85
23123--23166
20
2.2
20
83
4
61
56
4
0
38
1.20
23131--23169
20
2.0
20
94
0
69
56
5
0
38
1.22
23937--23978
6
7.0
6
97
0
66
38
50
11
0
1.40
26188--26214
8
3.4
8
100
0
54
25
14
37
22
1.93
31318--31353
17
2.1
17
90
10
56
13
22
11
52
1.72
34848--34877
2
15.0
2
100
0
60
50
0
0
50
1.00
35102--35159
19
2.9
19
82
5
71
31
20
12
36
1.89
44749--44797
21
2.3
21
92
0
80
28
8
22
40
1.82
46092--47011
460
2.0
459
98
0
1786
33
16
10
39
1.84
48062--48087
8
3.2
8
100
0
52
38
0
34
26
1.57
65951--66301
30
11.5
30
85
4
405
32
17
16
33
1.93

Tables:   1

The End!