Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017164.1 Corchorus olitorius cultivar O-4 contig17197, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  169517

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
505--562
20
2.8
20
92
2
89
31
5
13
50
1.64
27643--27675
18
1.9
17
88
11
50
81
0
18
0
0.68
38641--38788
21
7.1
20
77
9
152
28
17
31
22
1.97
38641--38788
42
3.5
42
97
0
269
28
17
31
22
1.97
67044--67243
100
2.0
100
97
0
373
33
28
12
26
1.92
68434--68460
3
9.0
3
100
0
54
33
0
33
33
1.58
72997--73044
4
12.2
4
80
10
55
79
0
2
18
0.84
73011--73042
7
4.4
7
96
4
55
84
0
0
15
0.63
78677--78706
2
15.0
2
100
0
60
50
0
0
50
1.00
81226--81262
19
2.0
19
89
5
58
64
0
0
35
0.94
83165--83267
51
2.0
51
83
3
127
41
13
24
20
1.88
91874--91947
32
2.3
33
92
2
132
33
9
12
44
1.74
97904--98358
251
1.8
251
90
0
732
29
16
24
30
1.96
99537--99600
31
2.1
31
82
5
76
28
12
15
43
1.83
101263--101855
301
2.0
302
80
6
677
32
12
17
37
1.87
101567--105359
666
5.7
659
83
6
3871
33
13
16
36
1.88
107160--107989
333
2.5
331
77
9
848
34
13
16
35
1.88
108045--108069
2
12.5
2
100
0
50
52
0
0
48
1.00
108841--109090
122
2.0
123
93
3
432
25
18
19
36
1.95
120160--120209
22
2.3
21
86
3
73
78
6
16
0
0.95
123160--123192
12
2.8
12
95
0
57
45
12
24
18
1.83
124889--124913
11
2.3
11
100
0
50
36
28
20
16
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129175--129201
13
2.1
13
100
0
54
59
7
25
7
1.51
130379--130409
2
15.5
2
100
0
62
51
0
0
48
1.00
131868--131959
45
2.0
45
97
0
175
22
29
4
43
1.72
134226--134301
20
3.5
20
68
22
62
46
38
2
13
1.57
134227--134325
47
2.1
47
98
0
189
45
33
4
17
1.67
134243--134319
26
3.2
26
65
24
76
46
31
5
16
1.69
135362--135453
46
2.0
46
100
0
184
39
15
17
28
1.90
142473--142512
19
2.0
20
90
4
64
25
12
7
55
1.63
145436--145489
17
3.3
17
68
19
51
48
20
18
12
1.81
161217--161269
26
2.0
26
92
0
88
49
13
11
26
1.75
161226--161285
26
2.3
26
82
5
68
51
13
11
23
1.73
168463--168515
26
2.0
26
100
0
106
30
26
13
30
1.94

Tables:   1

The End!