Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017165.1 Corchorus olitorius cultivar O-4 contig17198, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68051
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.33
Found at i:7818 original size:18 final size:18
Alignment explanation
Indices: 7795--7837 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
7785 TTGGGTTTAG
7795 TCAGTTTCTTGAGTCAGT
1 TCAGTTTCTTGAGTCAGT
*
7813 TCAGTTTTTTTGAGTCAGT
1 TCAG-TTTCTTGAGTCAGT
7832 T-AGTTT
1 TCAGTTT
7838 GAGCCTGAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
17 3 0.13
18 6 0.26
19 14 0.61
ACGTcount: A:0.16, C:0.12, G:0.21, T:0.51
Consensus pattern (18 bp):
TCAGTTTCTTGAGTCAGT
Found at i:9677 original size:13 final size:13
Alignment explanation
Indices: 9602--9724 Score: 82
Period size: 13 Copynumber: 9.8 Consensus size: 13
9592 TGGTGGAAAA
9602 TTTGATGAAGAAC
1 TTTGATGAAGAAC
9615 --TGAATGAA-AAC
1 TTTG-ATGAAGAAC
*
9626 -TTGTTGAAGAAC
1 TTTGATGAAGAAC
*
9638 AACTTGATGAAG-AC
1 --TTTGATGAAGAAC
*
9652 -TTGTTGAAGAAC
1 TTTGATGAAGAAC
*
9664 TTTGATGAATAAC
1 TTTGATGAAGAAC
* *
9677 TTTGGTGGAG-AC
1 TTTGATGAAGAAC
*
9689 -TTGTTGAAGAAC
1 TTTGATGAAGAAC
* *
9701 TTTGATGAATAAT
1 TTTGATGAAGAAC
9714 TTTGATGAAGA
1 TTTGATGAAGA
9725 CTTGTTTTAC
Statistics
Matches: 86, Mismatches: 14, Indels: 20
0.72 0.12 0.17
Matches are distributed among these distances:
11 24 0.28
12 16 0.19
13 36 0.42
14 2 0.02
15 8 0.09
ACGTcount: A:0.37, C:0.07, G:0.24, T:0.33
Consensus pattern (13 bp):
TTTGATGAAGAAC
Found at i:9689 original size:37 final size:37
Alignment explanation
Indices: 9641--9730 Score: 153
Period size: 37 Copynumber: 2.4 Consensus size: 37
9631 GAAGAACAAC
9641 TTGATGAAGACTTGTTGAAGAACTTTGATGAATAACT
1 TTGATGAAGACTTGTTGAAGAACTTTGATGAATAACT
* * *
9678 TTGGTGGAGACTTGTTGAAGAACTTTGATGAATAATT
1 TTGATGAAGACTTGTTGAAGAACTTTGATGAATAACT
9715 TTGATGAAGACTTGTT
1 TTGATGAAGACTTGTT
9731 TTACTTTTGG
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 48 1.00
ACGTcount: A:0.31, C:0.07, G:0.24, T:0.38
Consensus pattern (37 bp):
TTGATGAAGACTTGTTGAAGAACTTTGATGAATAACT
Found at i:9891 original size:36 final size:36
Alignment explanation
Indices: 9848--9916 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
9838 TTTGGTAGTA
* **
9848 TTGGGCCAGTAAAGTTGGGCCAACTTAATTATGTAT
1 TTGGGCCAATAAAGTTAAGCCAACTTAATTATGTAT
*
9884 TTGGGCCAATAGAGTTAAGCCAACTTAATTATG
1 TTGGGCCAATAAAGTTAAGCCAACTTAATTATG
9917 CACTTGGACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (36 bp):
TTGGGCCAATAAAGTTAAGCCAACTTAATTATGTAT
Found at i:12056 original size:39 final size:40
Alignment explanation
Indices: 11997--12072 Score: 136
Period size: 39 Copynumber: 1.9 Consensus size: 40
11987 TCCACCATTC
11997 ATGGCTCCCAATCGTGTCCAGAAGAAACCTTCAAGCGGCA
1 ATGGCTCCCAATCGTGTCCAGAAGAAACCTTCAAGCGGCA
*
12037 ATGG-TCCCAATCGTGTCCAGAAGAAACCTTCCAGCG
1 ATGGCTCCCAATCGTGTCCAGAAGAAACCTTCAAGCG
12073 ACAGCAACCG
Statistics
Matches: 35, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 31 0.89
40 4 0.11
ACGTcount: A:0.29, C:0.30, G:0.22, T:0.18
Consensus pattern (40 bp):
ATGGCTCCCAATCGTGTCCAGAAGAAACCTTCAAGCGGCA
Found at i:12260 original size:45 final size:45
Alignment explanation
Indices: 12204--12428 Score: 396
Period size: 45 Copynumber: 5.0 Consensus size: 45
12194 TACCCTCTAC
12204 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCA
1 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCA
*
12249 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCG
1 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCA
*
12294 GACTCTTGGCGGGGTTGATTTTTTTCGCCCTCTACCTCTGCATCA
1 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCA
*
12339 GACTCTTGGCGGGGTTGATTTTTTTATCGCCCTCTACCTCTGCATCG
1 GACTCTTGGCGGGGTTGA--TTTTTATCGCCCTCTACCTCTGCATCA
*
12386 GACTCTTGGCGGGGTTGATTTTCATCGCCCTCTACCTCTGCAT
1 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCAT
12429 TGGCCTCCTC
Statistics
Matches: 172, Mismatches: 6, Indels: 4
0.95 0.03 0.02
Matches are distributed among these distances:
45 129 0.75
47 43 0.25
ACGTcount: A:0.12, C:0.29, G:0.23, T:0.36
Consensus pattern (45 bp):
GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCA
Found at i:12322 original size:90 final size:91
Alignment explanation
Indices: 12204--12428 Score: 416
Period size: 92 Copynumber: 2.5 Consensus size: 91
12194 TACCCTCTAC
12204 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCAGACTCTTGGCGGGGTTGA-T
1 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCAGACTCTTGGCGGGGTTGATT
12268 TTTTATCGCCCTCTACCTCTGCATCG
66 TTTTATCGCCCTCTACCTCTGCATCG
*
12294 GACTCTTGGCGGGGTTGATTTTTTTCGCCCTCTACCTCTGCATCAGACTCTTGGCGGGGTTGATT
1 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCAGACTCTTGGCGGGGTTGA-T
12359 TTTTTATCGCCCTCTACCTCTGCATCG
65 TTTTTATCGCCCTCTACCTCTGCATCG
*
12386 GACTCTTGGCGGGGTTGATTTTCATCGCCCTCTACCTCTGCAT
1 GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCAT
12429 TGGCCTCCTC
Statistics
Matches: 130, Mismatches: 3, Indels: 2
0.96 0.02 0.01
Matches are distributed among these distances:
90 62 0.48
92 68 0.52
ACGTcount: A:0.12, C:0.29, G:0.23, T:0.36
Consensus pattern (91 bp):
GACTCTTGGCGGGGTTGATTTTTATCGCCCTCTACCTCTGCATCAGACTCTTGGCGGGGTTGATT
TTTTATCGCCCTCTACCTCTGCATCG
Found at i:16125 original size:52 final size:52
Alignment explanation
Indices: 16043--16195 Score: 272
Period size: 52 Copynumber: 3.0 Consensus size: 52
16033 TTTGTTTTTA
* *
16043 GCCTT-ACTTTTGCCTAGGCCGCCCCAATGGGGTTTTCAACCTAGCAGGCTT
1 GCCTTAACTTTTGCCTAAGCCGCCCCAATGGGGTTTTCAACTTAGCAGGCTT
*
16094 GCCTTAACTTTTGCCTAAGCCGCCCCGATGGGGTTTTCAACTTAGCAGGCTT
1 GCCTTAACTTTTGCCTAAGCCGCCCCAATGGGGTTTTCAACTTAGCAGGCTT
16146 GCCTTAACTTTTGCCTAAGCCGCCCCAATGGGGTTTTCAACTTAGCAGGC
1 GCCTTAACTTTTGCCTAAGCCGCCCCAATGGGGTTTTCAACTTAGCAGGC
16196 ATTTTTTTTT
Statistics
Matches: 97, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
51 5 0.05
52 92 0.95
ACGTcount: A:0.18, C:0.30, G:0.23, T:0.29
Consensus pattern (52 bp):
GCCTTAACTTTTGCCTAAGCCGCCCCAATGGGGTTTTCAACTTAGCAGGCTT
Found at i:23981 original size:13 final size:13
Alignment explanation
Indices: 23906--24065 Score: 99
Period size: 13 Copynumber: 12.8 Consensus size: 13
23896 TGGTGGAAAA
23906 TTTGATGAAGAAC
1 TTTGATGAAGAAC
23919 --TGAGTGAA-AAC
1 TTTGA-TGAAGAAC
*
23930 -TTGTTGAAGAAC
1 TTTGATGAAGAAC
*
23942 AACTTGATGAAG-AC
1 --TTTGATGAAGAAC
*
23956 -TTGTTGAAGAAC
1 TTTGATGAAGAAC
*
23968 TTTGATGAATAAC
1 TTTGATGAAGAAC
* *
23981 TTTGGTGGAG-AC
1 TTTGATGAAGAAC
*
23993 -TTGTTGAAGAAC
1 TTTGATGAAGAAC
*
24005 TTTGATGAATAAC
1 TTTGATGAAGAAC
*
24018 TTTCG-TGGAG-AC
1 TTT-GATGAAGAAC
*
24030 -TTGTTGAAGAAC
1 TTTGATGAAGAAC
* *
24042 TTTGATGAATAAT
1 TTTGATGAAGAAC
24055 TTTGATGAAGA
1 TTTGATGAAGA
24066 CTTGTTTCAT
Statistics
Matches: 114, Mismatches: 19, Indels: 28
0.71 0.12 0.17
Matches are distributed among these distances:
10 1 0.01
11 31 0.27
12 19 0.17
13 52 0.46
14 3 0.03
15 8 0.07
ACGTcount: A:0.34, C:0.08, G:0.24, T:0.33
Consensus pattern (13 bp):
TTTGATGAAGAAC
Found at i:23993 original size:37 final size:37
Alignment explanation
Indices: 23952--24071 Score: 204
Period size: 37 Copynumber: 3.2 Consensus size: 37
23942 AACTTGATGA
23952 AGACTTGTTGAAGAACTTTGATGAATAACTTTGGTGG
1 AGACTTGTTGAAGAACTTTGATGAATAACTTTGGTGG
*
23989 AGACTTGTTGAAGAACTTTGATGAATAACTTTCGTGG
1 AGACTTGTTGAAGAACTTTGATGAATAACTTTGGTGG
* * *
24026 AGACTTGTTGAAGAACTTTGATGAATAATTTTGATGA
1 AGACTTGTTGAAGAACTTTGATGAATAACTTTGGTGG
24063 AGACTTGTT
1 AGACTTGTT
24072 TCATTCTTGG
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 78 1.00
ACGTcount: A:0.31, C:0.08, G:0.24, T:0.37
Consensus pattern (37 bp):
AGACTTGTTGAAGAACTTTGATGAATAACTTTGGTGG
Found at i:24232 original size:36 final size:36
Alignment explanation
Indices: 24189--24257 Score: 102
Period size: 36 Copynumber: 1.9 Consensus size: 36
24179 TTTGGTAGTA
* **
24189 TTGGGCCAGTAAAGTTGGGCCAACTTAATTATGTAT
1 TTGGGCCAATAAAGTTAAGCCAACTTAATTATGTAT
*
24225 TTGGGCCAATAGAGTTAAGCCAACTTAATTATG
1 TTGGGCCAATAAAGTTAAGCCAACTTAATTATG
24258 CACTTGGACT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.30, C:0.14, G:0.23, T:0.32
Consensus pattern (36 bp):
TTGGGCCAATAAAGTTAAGCCAACTTAATTATGTAT
Found at i:25842 original size:10 final size:11
Alignment explanation
Indices: 25817--25841 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25807 CTTTTCGTAC
25817 TTTTCTTTTTT
1 TTTTCTTTTTT
25828 TTTTCTTTTTT
1 TTTTCTTTTTT
25839 TTT
1 TTT
25842 CCCGGTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.08, G:0.00, T:0.92
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:27029 original size:2 final size:2
Alignment explanation
Indices: 27022--27054 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
27012 AATTATTCTT
27022 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
27055 TTTACAAGAG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:29168 original size:36 final size:36
Alignment explanation
Indices: 29123--29205 Score: 157
Period size: 36 Copynumber: 2.3 Consensus size: 36
29113 TATGGTGGAT
*
29123 GTGATAATTTTCACGGTGCAATGAATTTTATGTTTG
1 GTGAAAATTTTCACGGTGCAATGAATTTTATGTTTG
29159 GTGAAAATTTTCACGGTGCAATGAATTTTATGTTTG
1 GTGAAAATTTTCACGGTGCAATGAATTTTATGTTTG
29195 GTGAAAATTTT
1 GTGAAAATTTT
29206 TTATTTTGCT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 46 1.00
ACGTcount: A:0.28, C:0.07, G:0.22, T:0.43
Consensus pattern (36 bp):
GTGAAAATTTTCACGGTGCAATGAATTTTATGTTTG
Found at i:33190 original size:27 final size:27
Alignment explanation
Indices: 33113--33194 Score: 110
Period size: 27 Copynumber: 3.0 Consensus size: 27
33103 AGCCGCGTAT
* * ** **
33113 TTCCGGCGGGGTTCCTCCACCTCCTAT
1 TTCCGGCGGGGGTCCTCCTCCTATTCC
33140 TTCCGGCGGGGGTCCTCCTCCTATTCC
1 TTCCGGCGGGGGTCCTCCTCCTATTCC
33167 TTCCGGCGGGGGTCCTCCTCCTATTCC
1 TTCCGGCGGGGGTCCTCCTCCTATTCC
33194 T
1 T
33195 GAGCCTCTTT
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 49 1.00
ACGTcount: A:0.05, C:0.40, G:0.24, T:0.30
Consensus pattern (27 bp):
TTCCGGCGGGGGTCCTCCTCCTATTCC
Found at i:33215 original size:18 final size:18
Alignment explanation
Indices: 33194--33232 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
33184 CTCCTATTCC
33194 TGAGCCTCTTTCAGATGA
1 TGAGCCTCTTTCAGATGA
33212 TGAGCCTCTTTCAGATGA
1 TGAGCCTCTTTCAGATGA
33230 TGA
1 TGA
33233 AACATGTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.33
Consensus pattern (18 bp):
TGAGCCTCTTTCAGATGA
Found at i:41138 original size:9 final size:9
Alignment explanation
Indices: 41098--41179 Score: 51
Period size: 9 Copynumber: 8.8 Consensus size: 9
41088 CATACCACTA
*
41098 ATAATTATT
1 ATAATAATT
* *
41107 ATTATTATT
1 ATAATAATT
41116 ATAATAAGTT
1 ATAATAA-TT
41126 -TAATAATT
1 ATAATAATT
*
41134 ATAATACCACTA
1 ATAATA--A-TT
41146 ATAATAAGTT
1 ATAATAA-TT
41156 -TAATAATT
1 ATAATAATT
* *
41164 ATTATAATA
1 ATAATAATT
41173 ATAATAA
1 ATAATAA
41180 GTCTAAATTA
Statistics
Matches: 58, Mismatches: 9, Indels: 12
0.73 0.11 0.15
Matches are distributed among these distances:
8 4 0.07
9 42 0.72
10 4 0.07
11 1 0.02
12 7 0.12
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (9 bp):
ATAATAATT
Found at i:41178 original size:30 final size:30
Alignment explanation
Indices: 41096--41179 Score: 105
Period size: 30 Copynumber: 2.8 Consensus size: 30
41086 TACATACCAC
* * *
41096 TAATAATTATTATTATTATTATAATAAGTT
1 TAATAATTATTATAATAATAATAATAAGTT
* ** *
41126 TAATAATTATAATACCACTAATAATAAGTT
1 TAATAATTATTATAATAATAATAATAAGTT
41156 TAATAATTATTATAATAATAATAA
1 TAATAATTATTATAATAATAATAA
41180 GTCTAAATTA
Statistics
Matches: 43, Mismatches: 11, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.50, C:0.04, G:0.02, T:0.44
Consensus pattern (30 bp):
TAATAATTATTATAATAATAATAATAAGTT
Found at i:44351 original size:64 final size:64
Alignment explanation
Indices: 44250--44378 Score: 197
Period size: 64 Copynumber: 2.0 Consensus size: 64
44240 CTGTGCATGC
* * *
44250 AAGGTCTCGAACCTGAGACTTGTTTAAGTTGGAACAAGCCGCTTACCACTTGA-TCAAACCCCAT
1 AAGGTCTCGAACCTAAGACCTGCTTAAGTTGGAACAAGCCGCTTACCACTTGATTC-AACCCCAT
* *
44314 AAGGTCTTGAACCTAAGACCTGCTTAAGTTGGAACAAGTCGCTTACCACTTGATTCAACCCCAT
1 AAGGTCTCGAACCTAAGACCTGCTTAAGTTGGAACAAGCCGCTTACCACTTGATTCAACCCCAT
44378 A
1 A
44379 TTACCACTTG
Statistics
Matches: 59, Mismatches: 5, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
64 57 0.97
65 2 0.03
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (64 bp):
AAGGTCTCGAACCTAAGACCTGCTTAAGTTGGAACAAGCCGCTTACCACTTGATTCAACCCCAT
Found at i:44386 original size:23 final size:23
Alignment explanation
Indices: 44356--44403 Score: 87
Period size: 23 Copynumber: 2.1 Consensus size: 23
44346 AACAAGTCGC
44356 TTACCACTTGATTCAACCCCATA
1 TTACCACTTGATTCAACCCCATA
*
44379 TTACCACTTGATTCAACCCCGTA
1 TTACCACTTGATTCAACCCCATA
44402 TT
1 TT
44404 GGTTAAGGGC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.27, C:0.33, G:0.06, T:0.33
Consensus pattern (23 bp):
TTACCACTTGATTCAACCCCATA
Found at i:53806 original size:12 final size:12
Alignment explanation
Indices: 53783--53822 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
53773 CCAAAAATAC
53783 AATTA-ATAATT
1 AATTAGATAATT
*
53794 AATTAGTTAATT
1 AATTAGATAATT
*
53806 AATAAGATAATT
1 AATTAGATAATT
53818 AATTA
1 AATTA
53823 CTTTAGAAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
11 5 0.21
12 19 0.79
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (12 bp):
AATTAGATAATT
Found at i:53930 original size:19 final size:19
Alignment explanation
Indices: 53906--53942 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
53896 CTGTTTATCT
* *
53906 ACTGTATAGATGAGATTAC
1 ACTGTATAAATCAGATTAC
53925 ACTGTATAAATCAGATTA
1 ACTGTATAAATCAGATTA
53943 GATACTGTGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.41, C:0.11, G:0.16, T:0.32
Consensus pattern (19 bp):
ACTGTATAAATCAGATTAC
Found at i:54007 original size:22 final size:21
Alignment explanation
Indices: 53971--54012 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
53961 TGCCAAAAAA
53971 AAAAGTAGTGCACTTCAGTTTT
1 AAAAGTAGTGCACTT-AGTTTT
53993 AAAAGTAGTTG-ACTTAGTTT
1 AAAAGTAG-TGCACTTAGTTT
54013 AATTGAATTG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 5 0.26
22 12 0.63
23 2 0.11
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.38
Consensus pattern (21 bp):
AAAAGTAGTGCACTTAGTTTT
Found at i:61647 original size:17 final size:17
Alignment explanation
Indices: 61625--61661 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
61615 ATTATTATTA
61625 AAAAAAGAAAAGAAAAG
1 AAAAAAGAAAAGAAAAG
* *
61642 AAAAAAGAAACGAAATG
1 AAAAAAGAAAAGAAAAG
61659 AAA
1 AAA
61662 TGAAATAAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.78, C:0.03, G:0.16, T:0.03
Consensus pattern (17 bp):
AAAAAAGAAAAGAAAAG
Done.