Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017167.1 Corchorus olitorius cultivar O-4 contig17200, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88493

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
472--515
20
2.2
20
80
15
56
47
0
0
52
1.00
1741--1912
86
2.0
86
100
0
344
43
13
15
27
1.85
7234--7370
70
2.0
70
94
2
240
43
13
24
18
1.87
12289--12360
32
2.3
32
85
4
94
38
26
5
29
1.79
20873--20916
12
3.6
12
85
11
54
56
2
2
38
1.24
20873--20924
13
4.0
13
85
5
61
50
1
1
46
1.23
21139--21178
5
8.0
5
100
0
80
80
0
20
0
0.72
23295--23344
26
1.9
26
91
0
82
36
28
16
20
1.93
23330--23360
16
1.9
16
93
0
53
45
38
3
12
1.59
24371--24396
10
2.6
10
100
0
52
92
0
7
0
0.39
24378--24403
13
2.0
13
100
0
52
92
0
7
0
0.39
44745--44798
26
2.1
26
100
0
108
53
22
0
24
1.46
44799--44825
14
1.9
14
100
0
54
37
14
25
22
1.93
49677--49705
15
1.9
15
100
0
58
34
10
20
34
1.87
51035--51064
16
1.9
16
93
6
53
63
0
33
3
1.11
51396--51774
64
5.9
64
98
1
724
23
12
29
34
1.91
74000--74051
11
4.8
11
72
13
54
76
17
5
0
0.97
74644--74812
31
5.4
31
81
3
178
30
22
24
22
1.99
84521--84600
41
2.0
41
92
0
133
42
13
13
30
1.83

Tables:   1

The End!