Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017169.1 Corchorus olitorius cultivar O-4 contig17202, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108228

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--44
2
22.5
2
95
4
81
47
0
0
52
1.00
1--58
10
5.7
11
93
4
72
44
1
0
53
1.10
233--347
57
2.0
57
93
0
194
34
23
1
40
1.65
414--481
21
3.2
21
66
15
59
30
5
13
50
1.65
1572--1686
56
2.0
57
94
1
205
33
23
1
41
1.65
1752--1832
42
1.9
42
89
0
126
29
9
13
46
1.75
4833--4878
12
3.7
12
82
5
56
43
6
4
45
1.49
9909--9971
21
3.1
20
75
9
65
39
14
19
26
1.90
17972--18017
23
2.0
23
83
8
58
41
4
10
43
1.59
29731--29765
16
2.2
16
90
10
54
25
74
0
0
0.82
36067--36101
17
2.0
18
88
5
54
51
0
5
42
1.25
43589--43622
5
6.8
5
86
0
50
0
23
0
76
0.79
68550--68589
21
1.9
21
94
0
71
35
20
10
35
1.86
69399--69436
6
6.3
6
100
0
76
84
0
15
0
0.63
72430--72545
60
1.9
59
89
1
178
37
25
18
18
1.94
76799--76890
48
2.0
45
85
10
125
35
30
17
16
1.92
78203--78260
30
1.9
30
82
6
73
3
22
3
70
1.17
79173--79208
13
2.8
13
86
0
54
19
44
8
27
1.79
79207--79288
41
2.0
41
87
0
119
41
19
13
25
1.88
79875--79904
15
2.0
15
100
0
60
33
26
13
26
1.93
83436--83460
1
25.0
1
100
0
50
0
0
0
100
0.00
83864--83914
25
2.0
25
100
0
102
37
23
0
39
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
87287--87312
2
13.0
2
100
0
52
50
0
0
50
1.00
94584--94685
51
2.0
50
83
5
125
22
22
12
42
1.87
98087--98139
27
2.0
27
85
7
72
45
16
16
20
1.86
98131--98236
33
3.2
33
90
0
158
45
31
12
11
1.77
100830--100871
22
1.9
22
90
0
66
19
28
33
19
1.96
108090--108145
29
2.0
28
92
3
94
39
21
10
28
1.87

Tables:   1

The End!