Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017170.1 Corchorus olitorius cultivar O-4 contig17203, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43555

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8177--8234
19
2.9
19
82
5
71
36
10
22
31
1.88
9165--9205
20
2.1
19
86
13
57
17
9
2
70
1.25
13893--13988
27
3.6
27
76
5
113
22
21
12
42
1.87
13892--14014
54
2.3
54
97
0
228
23
23
13
39
1.89
13920--14015
27
3.6
27
76
5
113
23
23
12
39
1.89
15658--15691
12
2.8
12
90
0
50
61
2
35
0
1.11
20230--20424
96
2.0
96
97
0
372
34
25
11
28
1.91
21152--21419
105
2.6
104
93
1
439
39
9
8
42
1.68
22059--22152
45
2.2
42
86
7
127
41
20
4
34
1.72
24028--24067
2
20.0
2
90
10
64
50
0
2
47
1.14
24028--24067
11
3.3
12
89
10
64
50
0
2
47
1.14
27327--27384
29
2.0
30
82
3
73
31
12
29
27
1.92
27449--27517
29
2.3
31
82
5
88
40
14
24
20
1.90
27093--27993
304
3.0
304
94
0
1520
28
18
26
26
1.98
27755--27821
31
2.2
31
84
5
84
43
14
20
20
1.88
29144--29238
46
2.1
45
82
2
109
30
22
11
35
1.89
31514--31543
15
2.0
15
93
0
51
33
10
0
56
1.32
32563--32671
52
2.0
54
94
5
195
60
10
12
16
1.58
32765--32795
15
2.1
15
93
0
53
25
38
6
29
1.81
34554--34579
11
2.4
11
100
0
52
7
15
7
69
1.35
35323--35370
21
2.3
20
75
10
51
20
10
6
62
1.49
35733--35763
15
2.1
15
100
0
62
25
41
6
25
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36851--36881
15
2.1
15
93
0
53
22
41
6
29
1.78
37961--37991
15
2.1
15
93
0
53
29
41
3
25
1.71
39058--39088
15
2.1
15
93
0
53
29
41
3
25
1.71
40168--40198
15
2.1
15
93
0
53
29
41
3
25
1.71
41282--41312
15
2.1
15
93
0
53
29
41
3
25
1.71

Tables:   1

The End!