Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017175.1 Corchorus olitorius cultivar O-4 contig17208, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7783
ACGTcount: A:0.36, C:0.19, G:0.17, T:0.28


Found at i:2036 original size:2 final size:2

Alignment explanation


    Indices: 2029--2062  Score: 68
    Period size: 2  Copynumber: 17.0  Consensus size: 2

       2019 CTAATTACAG

                                                              
       2029 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC
          1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC

       2063 TGTTAGATAC


Statistics
Matches: 32,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   32  1.00

ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00


Consensus pattern (2 bp):   
AC

Found at i:7257 original size:84 final size:84

Alignment explanation


    Indices: 7150--7317  Score: 318
    Period size: 84  Copynumber: 2.0  Consensus size: 84

       7140 ATCTGACTTT

                                                                             
       7150 CCTTCAGATTCGAAAGTTGTCGTCGAAGAAGACTGATGCAAATTGTCTGTACTTTCTTCTACTAG
          1 CCTTCAGATTCGAAAGTTGTCGTCGAAGAAGACTGATGCAAATTGTCTGTACTTTCTTCTACTAG

                               
       7215 TATAGAAGAAGCCGTCTCA
         66 TATAGAAGAAGCCGTCTCA

                      *                           *                          
       7234 CCTTCAGATTTGAAAGTTGTCGTCGAAGAAGACTGATGTAAATTGTCTGTACTTTCTTCTACTAG
          1 CCTTCAGATTCGAAAGTTGTCGTCGAAGAAGACTGATGCAAATTGTCTGTACTTTCTTCTACTAG

                               
       7299 TATAGAAGAAGCCGTCTCA
         66 TATAGAAGAAGCCGTCTCA

       7318 GAAAGAGGCT


Statistics
Matches: 82,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  84   82  1.00

ACGTcount: A:0.29, C:0.19, G:0.20, T:0.32


Consensus pattern (84 bp):   
CCTTCAGATTCGAAAGTTGTCGTCGAAGAAGACTGATGCAAATTGTCTGTACTTTCTTCTACTAG
TATAGAAGAAGCCGTCTCA
Done.