Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017178.1 Corchorus olitorius cultivar O-4 contig17211, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39263

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1120--1152
17
2.0
17
88
5
50
69
0
9
21
1.15
7462--7510
22
2.2
23
89
7
75
53
6
8
32
1.55
17045--17098
19
2.6
21
77
19
60
38
18
3
38
1.69
26965--27012
24
2.0
24
96
4
89
27
29
4
39
1.75
27239--27277
20
2.0
20
89
0
60
64
10
0
25
1.25
32184--32234
15
3.4
14
81
10
57
31
1
0
66
1.03
32178--32244
33
2.0
34
82
8
84
32
1
0
65
1.02
32989--33058
22
3.2
22
91
0
95
35
7
12
44
1.70
33339--33364
13
2.0
13
100
0
52
46
15
0
38
1.46
33402--33507
56
1.9
56
90
0
167
33
8
11
47
1.70
33821--33943
31
4.0
31
78
4
131
26
14
21
37
1.92
34554--34597
23
1.9
23
95
0
79
59
15
2
22
1.48
34650--34702
27
1.9
27
84
3
70
32
5
3
58
1.39
36688--36750
30
2.1
30
90
0
99
33
4
11
50
1.59
37805--37946
49
3.0
47
82
9
169
50
5
16
27
1.67

Tables:   1

The End!