genome.fa.s17184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017184.1 Corchorus olitorius cultivar O-4 contig17217, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40091

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1601--1672	37	2.0	36	88	2	108	23	30	20	25	1.99
1636--1694	28	2.1	29	90	3	93	25	35	18	20	1.95
1751--1781	14	2.3	14	94	5	55	22	6	22	48	1.73
1924--2008	18	5.1	18	71	25	80	4	29	21	44	1.72
1896--2085	47	4.0	47	84	6	251	7	26	19	46	1.76
2022--2060	18	2.2	18	86	9	53	5	28	20	46	1.72
1896--2085	95	2.0	93	89	9	289	7	26	19	46	1.76
4350--4393	21	2.1	21	91	0	70	25	29	9	36	1.86
5550--5613	22	3.0	20	79	18	76	75	0	25	0	0.81
5556--5596	15	2.7	15	78	14	57	80	0	19	0	0.71
5551--5612	20	3.0	20	82	17	81	77	0	22	0	0.77
7018--7091	28	2.7	27	87	6	96	18	17	28	35	1.94
7141--7207	32	2.1	32	97	0	125	49	17	10	22	1.77
12069--12322	132	1.9	131	91	3	411	36	10	1	51	1.46
14495--14588	45	2.2	43	88	7	138	38	21	5	35	1.76
16706--16795	45	2.1	42	85	8	119	38	22	5	33	1.77
21090--21215	62	2.0	62	93	0	216	32	33	8	25	1.86
24360--24440	37	2.2	37	95	0	144	45	8	13	32	1.74
24366--24429	22	3.2	22	65	28	61	43	7	15	32	1.76
24376--24443	21	3.5	20	71	20	72	47	7	13	32	1.70
30671--30733	24	2.6	24	84	0	81	15	20	28	34	1.94
33244--33571	166	2.0	165	85	5	439	36	10	8	44	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33585--33623	20	2.0	20	85	10	53	28	5	2	64	1.28
33789--34021	22	10.5	22	71	9	127	35	8	18	38	1.80
33786--34833	66	16.3	68	69	16	369	38	8	16	36	1.79
33790--34831	44	23.8	45	66	19	261	38	8	16	36	1.79
34037--34187	22	6.9	21	72	13	92	35	6	17	39	1.76
33899--34166	144	1.8	144	84	4	360	35	7	17	39	1.78
34210--34415	22	9.3	23	70	14	114	43	9	13	33	1.77
34543--34968	22	19.6	22	70	15	167	38	9	15	36	1.80
34883--34970	45	2.0	45	81	4	106	35	12	14	37	1.84
38810--38834	13	1.9	13	100	0	50	48	4	8	40	1.51

Tables:   1

The End!