Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017188.1 Corchorus olitorius cultivar O-4 contig17221, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  43693

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
984--1030
12
3.7
12
85
8
58
55
10
2
31
1.46
1761--2024
131
2.0
132
87
0
386
40
12
15
31
1.85
2231--3185
437
2.2
440
80
8
1027
30
14
12
41
1.83
3991--4041
6
9.0
6
87
12
81
33
15
0
50
1.44
4077--4324
120
2.0
124
88
5
382
36
13
4
45
1.63
4389--4413
6
4.2
6
100
0
50
68
0
0
32
0.90
6878--6959
42
2.0
42
90
0
128
35
15
1
47
1.54
7382--7429
13
3.8
13
84
15
73
22
43
8
25
1.81
7381--7440
13
4.9
11
77
20
57
21
45
8
25
1.80
7381--7440
25
2.4
25
97
0
111
21
45
8
25
1.80
8445--8481
19
2.0
18
94
5
65
27
0
2
70
1.01
8445--8493
16
2.9
16
84
9
53
30
0
4
65
1.11
8622--8651
14
2.1
14
100
0
60
46
13
6
33
1.69
9997--10088
47
1.9
48
86
2
132
21
22
9
45
1.81
13127--13219
48
1.9
48
93
0
159
21
24
8
45
1.80
13142--13216
23
3.2
22
71
14
69
18
24
8
49
1.74
18454--18486
13
2.5
13
100
0
66
39
24
6
30
1.79
19689--19735
5
9.2
5
86
4
67
76
0
19
4
0.95
19676--19735
26
2.3
26
83
8
70
76
0
18
5
0.96
21164--21333
54
3.1
55
85
8
224
31
18
20
28
1.97
21308--21523
35
6.3
35
85
4
280
29
12
17
40
1.86
21308--21523
103
2.1
102
89
5
328
29
12
17
40
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21447--21614
91
1.8
91
94
0
300
25
12
19
42
1.86
21410--21649
126
1.9
126
90
0
381
26
13
19
40
1.88
21536--21737
35
5.8
35
92
0
314
26
13
21
38
1.90
21377--21685
161
1.9
159
90
1
492
26
12
19
41
1.87
21703--21909
54
3.9
55
86
5
273
28
18
21
30
1.97
27124--27375
104
2.5
104
87
6
354
40
9
9
41
1.69
27124--27379
102
2.5
105
88
5
364
40
8
8
41
1.68
28892--28942
24
2.1
25
85
3
68
17
7
3
70
1.27
31760--32260
169
3.0
168
84
4
642
32
7
25
34
1.84
38056--38124
29
2.3
30
83
11
81
49
18
5
26
1.70
41649--41682
11
3.2
11
87
8
52
2
14
0
82
0.79

Tables:   1

The End!