Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017192.1 Corchorus olitorius cultivar O-4 contig17225, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 886

Length: 1478
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32


Found at i:1307 original size:20 final size:21

Alignment explanation


    Indices: 1282--1324  Score: 61
    Period size: 20  Copynumber: 2.1  Consensus size: 21

       1272 TTATTTAGCG

                                 
       1282 GCGTCTAAAGAACAAAAC-CC
          1 GCGTCTAAAGAACAAAACGCC

                  **             
       1302 GCGTCTTTAGAACAAAACGCC
          1 GCGTCTAAAGAACAAAACGCC

              
       1323 GC
          1 GC

       1325 TATATTTAAC


Statistics
Matches: 20,  Mismatches: 2, Indels: 1
        0.87            0.09        0.04

Matches are distributed among these distances:
  20   16  0.80
  21    4  0.20

ACGTcount: A:0.37, C:0.30, G:0.19, T:0.14


Consensus pattern (21 bp):   
GCGTCTAAAGAACAAAACGCC

Found at i:1311 original size:32 final size:32

Alignment explanation


    Indices: 1167--1299  Score: 221
    Period size: 32  Copynumber: 4.2  Consensus size: 32

       1157 GTGTGGAAAG

                                   *        
       1167 AAAACGCCCTTATTTAGCGGCGTTTAAAGAAC
          1 AAAACGCCCTTATTTAGCGGCGTCTAAAGAAC

                                            
       1199 AAAACGCCCTTATTTAGCGGCGTCTAAAGAAC
          1 AAAACGCCCTTATTTAGCGGCGTCTAAAGAAC

                   *        *         *     
       1231 AAAACGCTCTTATTTAACGGCGTCTAGAGAAC
          1 AAAACGCCCTTATTTAGCGGCGTCTAAAGAAC

            *                               
       1263 GAAACGCCCTTATTTAGCGGCGTCTAAAGAAC
          1 AAAACGCCCTTATTTAGCGGCGTCTAAAGAAC

                 
       1295 AAAAC
          1 AAAAC

       1300 CCGCGTCTTT


Statistics
Matches: 92,  Mismatches: 9, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  32   92  1.00

ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23


Consensus pattern (32 bp):   
AAAACGCCCTTATTTAGCGGCGTCTAAAGAAC
Done.