Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017194.1 Corchorus olitorius cultivar O-4 contig17227, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25934

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2502--2541
17
2.4
17
87
8
55
40
20
20
20
1.92
6217--6394
88
2.0
88
83
2
223
31
25
11
31
1.92
7117--7176
18
3.3
18
71
0
57
28
23
26
21
1.99
8540--8575
17
2.1
17
89
0
54
30
11
19
38
1.86
9137--9199
28
2.3
28
84
13
78
55
11
1
31
1.44
10281--10871
297
2.0
297
95
1
1060
26
14
17
41
1.87
12152--12192
22
1.9
22
85
5
57
41
21
7
29
1.80
12197--12228
3
11.0
3
93
6
57
34
0
0
65
0.93
12201--12228
14
2.0
14
100
0
56
35
0
0
64
0.94
12765--12796
12
2.6
13
90
9
50
43
0
12
43
1.42
15275--15362
43
2.0
43
89
4
133
36
18
10
35
1.84
20553--20601
2
25.0
2
95
4
91
48
0
0
51
1.00
20663--20706
22
2.0
22
82
8
54
43
11
4
40
1.61
20721--21111
22
17.7
21
72
11
196
37
15
9
37
1.80
21033--21111
23
3.5
23
86
6
108
37
17
6
37
1.76
21117--21253
22
6.3
21
75
12
100
34
14
9
41
1.78
21109--21232
44
2.8
42
77
9
115
36
12
9
41
1.75
21360--21460
22
4.6
21
72
14
71
33
13
10
41
1.80
21357--21460
44
2.4
44
76
0
118
32
13
10
43
1.78
21502--21574
20
3.5
20
78
15
78
34
16
9
39
1.81
21595--21654
22
2.7
22
82
7
77
45
13
10
31
1.76
21620--21735
22
5.3
21
71
7
63
35
18
9
36
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
21637--21740
44
2.4
43
77
6
102
35
19
9
35
1.84
21745--21886
44
3.2
44
74
15
132
36
17
10
35
1.84
21837--21887
22
2.3
22
83
6
59
41
19
5
33
1.76
24829--24910
12
6.8
12
87
2
119
31
10
24
32
1.90

Tables:   1

The End!