Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017197.1 Corchorus olitorius cultivar O-4 contig17230, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2740
ACGTcount: A:0.37, C:0.13, G:0.11, T:0.39


Found at i:180 original size:2 final size:2

Alignment explanation


    Indices: 173--228  Score: 76
    Period size: 2  Copynumber: 26.0  Consensus size: 2

        163 CTTACAAATC

                                                                           
        173 AT AT AT AT CAT AT AT AT CAT AT CAT AT CAT AT AT AT AT AT AT AT
          1 AT AT AT AT -AT AT AT AT -AT AT -AT AT -AT AT AT AT AT AT AT AT

                             
        217 AT AT AT AT AT AT
          1 AT AT AT AT AT AT

        229 TAAACTGTAG


Statistics
Matches: 50,  Mismatches: 0, Indels: 8
        0.86            0.00        0.14

Matches are distributed among these distances:
   2   42  0.84
   3    8  0.16

ACGTcount: A:0.46, C:0.07, G:0.00, T:0.46


Consensus pattern (2 bp):   
AT

Done.