Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017200.1 Corchorus olitorius cultivar O-4 contig17233, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2265
ACGTcount: A:0.31, C:0.15, G:0.21, T:0.33


Found at i:1981 original size:12 final size:11

Alignment explanation


    Indices: 1936--1992  Score: 51
    Period size: 12  Copynumber: 4.8  Consensus size: 11

       1926 CCCGTTGAGG

                       
       1936 AAATGTTTTAT
          1 AAATGTTTTAT

            * *          
       1947 TACTGTTTTATAT
          1 AAATG-TTT-TAT

                 *     
       1960 AAATGATTTAT
          1 AAATGTTTTAT

                         
       1971 AAAATGTTTTAGT
          1 -AAATGTTTTA-T

                     
       1984 AAATGTTTT
          1 AAATGTTTT

       1993 GGGTGCATGA


Statistics
Matches: 36,  Mismatches: 6, Indels: 7
        0.73            0.12        0.14

Matches are distributed among these distances:
  11    6  0.17
  12   23  0.64
  13    7  0.19

ACGTcount: A:0.35, C:0.02, G:0.11, T:0.53


Consensus pattern (11 bp):   
AAATGTTTTAT
Done.