Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017202.1 Corchorus olitorius cultivar O-4 contig17235, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26828

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
463--511
15
3.3
14
82
5
53
6
44
2
46
1.39
1734--1770
19
2.0
19
94
5
67
62
0
0
37
0.96
3467--3491
13
1.9
13
100
0
50
44
8
8
40
1.63
5643--5736
46
2.1
45
93
2
161
46
11
7
34
1.68
11041--11118
22
3.5
22
81
10
95
35
14
11
38
1.82
11041--11140
46
2.2
44
85
7
130
36
16
11
37
1.83
11129--11260
22
6.0
22
73
11
83
34
15
6
43
1.73
11216--11301
23
3.8
23
77
10
79
39
13
6
39
1.72
12377--12485
21
5.2
21
62
16
64
49
14
6
29
1.68
12364--12486
42
2.9
42
98
0
237
47
15
7
30
1.73
14058--14146
44
2.1
43
87
8
128
37
23
5
33
1.78
14200--14264
32
2.0
32
93
0
112
29
9
6
55
1.56
15186--15283
44
2.2
44
80
12
128
41
4
9
44
1.55
15981--16036
23
2.5
22
85
8
69
46
7
7
39
1.59
15960--16420
22
20.5
22
68
12
186
37
11
15
35
1.84
16794--16852
27
2.2
27
84
6
75
40
3
10
45
1.54

Tables:   1

The End!