Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017203.1 Corchorus olitorius cultivar O-4 contig17236, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 13459
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35


Found at i:7926 original size:33 final size:35

Alignment explanation


    Indices: 7846--7930  Score: 111
    Period size: 33  Copynumber: 2.4  Consensus size: 35

       7836 AAAAGATCAT

                          *                  *   
       7846 ATGCACCACATGGATTTTTTCATTTTATTTGGTTCAA
          1 ATGCACCACATGG-CTTTTTCATTTTA-TTGGTACAA

                                               
       7883 ATGCACCACATGGCTTTTTC-TTTTA-TGGTACAA
          1 ATGCACCACATGGCTTTTTCATTTTATTGGTACAA

            *              
       7916 GTGCACCACATGGCT
          1 ATGCACCACATGGCT

       7931 CTGATTTTTG


Statistics
Matches: 45,  Mismatches: 3, Indels: 4
        0.87            0.06        0.08

Matches are distributed among these distances:
  33   21  0.47
  35    5  0.11
  36    6  0.13
  37   13  0.29

ACGTcount: A:0.24, C:0.21, G:0.16, T:0.39


Consensus pattern (35 bp):   
ATGCACCACATGGCTTTTTCATTTTATTGGTACAA
Done.