Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017213.1 Corchorus olitorius cultivar O-4 contig17246, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60441

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4245--4286
12
3.0
14
83
16
52
23
2
45
28
1.66
4246--4287
14
3.0
14
82
6
50
26
2
45
26
1.66
10190--10259
36
1.9
36
91
0
113
21
10
7
61
1.51
10773--11180
201
2.0
202
95
2
732
43
8
11
36
1.71
11292--11367
39
2.0
38
94
2
134
36
2
9
51
1.48
11589--11636
2
23.5
2
87
4
69
47
0
6
45
1.27
12148--12206
31
1.9
31
82
6
75
47
8
20
23
1.77
18289--18323
2
17.5
2
87
0
52
45
0
0
54
0.99
18289--18322
10
3.4
10
95
0
59
44
0
0
55
0.99
18550--18621
31
2.3
31
77
13
85
25
4
9
61
1.45
18872--18939
13
5.3
12
73
19
50
42
1
2
52
1.25
19143--19193
16
3.2
16
76
13
61
39
39
13
7
1.74
20428--20467
16
2.5
16
83
0
53
45
27
15
12
1.82
21243--21276
17
2.0
17
88
0
50
79
0
14
5
0.91
25601--25685
28
3.0
28
100
0
170
24
10
21
43
1.84
29588--29639
14
3.5
14
76
20
52
32
15
13
38
1.86
30477--30606
67
2.0
65
89
6
199
47
9
12
30
1.72
32857--32968
56
2.0
56
96
0
206
42
20
10
25
1.84
33717--33812
50
1.9
50
100
0
192
29
29
16
25
1.97
36865--36932
37
2.0
34
86
13
95
32
8
26
32
1.87
37588--37641
27
2.0
27
100
0
108
29
14
29
25
1.95
39572--39621
24
2.2
23
85
7
66
26
12
24
38
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39716--39901
94
2.0
94
88
1
275
31
12
2
53
1.50
40531--40565
16
2.2
16
89
0
52
8
14
40
37
1.76
41370--41518
37
3.9
37
86
3
190
36
14
16
32
1.89
42459--42503
15
3.1
15
87
3
65
51
2
26
20
1.59
47286--47330
15
3.1
15
87
3
56
55
2
20
22
1.54
54901--54972
31
2.3
31
83
4
92
37
38
15
8
1.77
58321--58378
30
1.9
30
100
0
116
48
24
6
20
1.74

Tables:   1

The End!