Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017215.1 Corchorus olitorius cultivar O-4 contig17248, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20888

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6842--6945
41
2.5
40
79
11
111
48
18
12
21
1.81
6998--7042
23
2.0
23
82
4
56
42
0
22
35
1.54
8834--8961
58
2.2
57
92
4
211
39
9
13
38
1.77
8998--9069
26
2.7
27
89
2
110
38
26
16
18
1.91
9527--9947
69
6.1
69
92
0
646
30
15
27
27
1.96
9949--10136
50
3.8
50
97
0
349
29
12
26
32
1.92
10236--10528
91
3.3
91
92
2
459
36
13
18
31
1.89
10938--11051
49
2.3
49
83
4
131
34
16
17
31
1.93
11020--11086
33
2.0
33
94
0
116
29
14
14
40
1.87
11726--11775
20
2.5
20
83
9
57
10
0
12
78
0.98
11734--11797
26
2.4
28
80
17
82
10
1
10
76
1.09
11739--11847
23
5.0
21
70
17
78
11
0
11
76
1.08
11734--11806
26
2.8
26
78
12
78
10
1
10
76
1.08
11732--11819
22
3.8
24
75
17
87
11
1
10
77
1.05
15049--15078
13
2.4
13
94
5
53
33
0
43
23
1.54
18470--18555
40
2.1
40
81
10
95
47
15
16
20
1.82
18695--18739
23
2.0
23
82
4
56
42
0
22
35
1.54

Tables:   1

The End!