Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017216.1 Corchorus olitorius cultivar O-4 contig17249, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4443
ACGTcount: A:0.31, C:0.14, G:0.18, T:0.37


Found at i:1490 original size:11 final size:11

Alignment explanation


    Indices: 1474--1498  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

       1464 AGAAAATTGT

                       
       1474 TTGTTTTTGGA
          1 TTGTTTTTGGA

                       
       1485 TTGTTTTTGGA
          1 TTGTTTTTGGA

               
       1496 TTG
          1 TTG

       1499 ATTATTCATT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.08, C:0.00, G:0.28, T:0.64


Consensus pattern (11 bp):   
TTGTTTTTGGA
Done.