Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017220.1 Corchorus olitorius cultivar O-4 contig17253, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1746
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31


Found at i:1338 original size:26 final size:26

Alignment explanation


    Indices: 1286--1344  Score: 75
    Period size: 26  Copynumber: 2.3  Consensus size: 26

       1276 CATCAGGTGG

                            *         
       1286 TATTATTATTTAATAGTTGTAATATT
          1 TATTATTATTTAATAGATGTAATATT

                        *        *     
       1312 TATTATTATTTATTA-ATGTATTCATT
          1 TATTATTATTTAATAGATGTAAT-ATT

                   
       1338 TATTATT
          1 TATTATT

       1345 GCCGCAGGTG


Statistics
Matches: 29,  Mismatches: 3, Indels: 2
        0.85            0.09        0.06

Matches are distributed among these distances:
  25    5  0.17
  26   24  0.83

ACGTcount: A:0.32, C:0.02, G:0.05, T:0.61


Consensus pattern (26 bp):   
TATTATTATTTAATAGATGTAATATT
Done.