Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017222.1 Corchorus olitorius cultivar O-4 contig17255, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74605

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
148--186
20
1.9
21
89
5
62
66
17
2
12
1.35
1963--2004
20
2.1
20
95
0
75
42
4
0
52
1.22
2277--2343
27
2.5
26
86
11
75
19
44
17
17
1.87
5526--5567
16
2.4
18
88
7
61
45
2
0
52
1.13
29801--30313
131
3.9
131
81
2
546
36
13
11
39
1.81
29794--30313
263
2.0
262
82
4
647
35
13
11
39
1.81
31552--31699
75
2.0
75
89
2
226
39
11
12
37
1.79
32144--32170
7
3.9
7
100
0
54
88
0
0
11
0.50
37858--37919
30
2.1
30
96
0
115
25
24
4
45
1.73
38844--38927
18
4.5
18
69
24
66
42
1
3
52
1.26
38842--38924
30
3.0
27
83
10
112
43
2
3
50
1.32
42067--42886
273
3.0
273
95
0
1460
44
11
18
25
1.84
42071--42886
274
3.0
273
95
0
1452
44
11
18
25
1.84
43638--43830
96
2.0
96
97
0
368
31
11
13
43
1.79
52121--52150
15
2.0
15
93
0
51
26
10
26
36
1.88
54596--54665
35
2.1
34
94
5
124
42
17
11
28
1.83
57957--58018
31
2.0
31
87
0
88
41
3
19
35
1.67
58654--58875
111
2.0
112
95
0
401
30
14
27
28
1.95
58930--58954
1
25.0
1
100
0
50
0
0
0
100
0.00
67072--67164
32
2.9
31
82
4
105
51
18
8
21
1.72
67660--67800
32
4.4
32
84
7
146
19
9
31
39
1.84
67660--67810
65
2.4
64
84
4
189
18
9
31
39
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
67679--67810
32
4.1
32
88
1
183
18
8
32
40
1.81
67956--67995
16
2.5
16
91
0
62
10
12
32
45
1.75
67987--68024
16
2.4
16
95
0
67
7
10
31
50
1.66
68579--68670
34
2.9
30
73
19
87
35
6
16
41
1.74
68592--68657
34
1.9
34
87
6
98
37
3
16
42
1.64
69515--69564
17
2.9
17
82
11
75
44
18
8
30
1.78
72120--72146
14
1.9
14
100
0
54
37
0
44
18
1.50

Tables:   1

The End!