Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017223.1 Corchorus olitorius cultivar O-4 contig17256, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45190

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3044--3088
22
2.0
22
95
0
81
57
13
15
13
1.65
16713--17160
21
21.4
21
75
14
367
52
4
22
20
1.66
16713--17055
43
8.0
42
82
9
353
53
4
21
20
1.63
16721--17090
7
51.3
7
64
15
94
52
4
22
20
1.63
16713--17160
106
4.3
106
80
11
464
52
4
22
20
1.66
16713--17048
149
2.3
149
93
2
577
52
4
21
21
1.64
17295--17345
26
2.0
26
88
7
77
56
1
19
21
1.51
23245--23599
175
2.0
175
95
0
629
36
14
12
36
1.83
25711--25738
6
4.7
6
100
0
56
17
17
0
64
1.30
27334--27521
100
1.9
100
92
0
313
41
14
12
31
1.83
27810--27869
31
1.9
31
86
0
84
30
10
26
33
1.89
28747--29133
196
2.0
195
89
2
587
35
17
13
32
1.89
30351--30380
11
2.7
11
100
0
60
6
10
56
26
1.57
30431--30467
19
2.0
19
89
5
58
35
0
0
64
0.94
30814--30849
5
7.6
5
87
12
58
58
0
19
22
1.40
34053--34115
31
2.0
31
100
0
126
26
12
15
44
1.83
35704--35743
15
2.7
15
80
0
53
50
7
7
35
1.59
35703--35748
22
2.0
23
91
4
76
43
6
10
39
1.66
39258--39291
2
17.0
2
100
0
68
50
0
0
50
1.00
39516--39780
76
3.5
75
87
3
363
18
26
35
18
1.94

Tables:   1

The End!