Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017224.1 Corchorus olitorius cultivar O-4 contig17257, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11002
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33


Found at i:10678 original size:22 final size:21

Alignment explanation


    Indices: 10648--10695  Score: 51
    Period size: 22  Copynumber: 2.2  Consensus size: 21

      10638 TTTTTTTTAC

                *      *          
      10648 AACATAAAAAATAAATAAAACT
          1 AACAAAAAAAACAAATAAAA-T

                     *        *  
      10670 AACAAAAAATACAAATAACAT
          1 AACAAAAAAAACAAATAAAAT

                 
      10691 AACAA
          1 AACAA

      10696 CAAAGATTAT


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  21    6  0.27
  22   16  0.73

ACGTcount: A:0.73, C:0.12, G:0.00, T:0.15


Consensus pattern (21 bp):   
AACAAAAAAAACAAATAAAAT
Done.