Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017226.1 Corchorus olitorius cultivar O-4 contig17259, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4459
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.28


Found at i:3003 original size:17 final size:17

Alignment explanation


    Indices: 2983--3018  Score: 54
    Period size: 17  Copynumber: 2.1  Consensus size: 17

       2973 ATATAAAGAG

                             
       2983 CTATCTAGTATAACAAA
          1 CTATCTAGTATAACAAA

                  *  *       
       3000 CTATCTGGTGTAACAAA
          1 CTATCTAGTATAACAAA

              
       3017 CT
          1 CT

       3019 TTACAAATCA


Statistics
Matches: 17,  Mismatches: 2, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  17   17  1.00

ACGTcount: A:0.39, C:0.19, G:0.11, T:0.31


Consensus pattern (17 bp):   
CTATCTAGTATAACAAA
Done.