Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017227.1 Corchorus olitorius cultivar O-4 contig17260, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5089
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36


Found at i:1076 original size:16 final size:16

Alignment explanation


    Indices: 1055--1086  Score: 55
    Period size: 16  Copynumber: 2.0  Consensus size: 16

       1045 TTTTGGCCTC

                            
       1055 AGGTCACTCGGGTTTT
          1 AGGTCACTCGGGTTTT

                  *         
       1071 AGGTCATTCGGGTTTT
          1 AGGTCACTCGGGTTTT

       1087 GGGTTTTTTT


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  16   15  1.00

ACGTcount: A:0.12, C:0.16, G:0.31, T:0.41


Consensus pattern (16 bp):   
AGGTCACTCGGGTTTT
Done.