Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017230.1 Corchorus olitorius cultivar O-4 contig17263, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9886
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.36


Found at i:7160 original size:27 final size:27

Alignment explanation


    Indices: 7112--7172  Score: 68
    Period size: 27  Copynumber: 2.3  Consensus size: 27

       7102 ATTACCAAAA

                 *           *    *    
       7112 TACCCGTGATGGACAAATTTACTATAT
          1 TACCCCTGATGGACAAAATTACGATAT

                      *  *           * 
       7139 TACCCCTGATTGATAAAATTACGATTT
          1 TACCCCTGATGGACAAAATTACGATAT

                   
       7166 TACCCCT
          1 TACCCCT

       7173 ATAATGAGGA


Statistics
Matches: 28,  Mismatches: 6, Indels: 0
        0.82            0.18        0.00

Matches are distributed among these distances:
  27   28  1.00

ACGTcount: A:0.31, C:0.23, G:0.11, T:0.34


Consensus pattern (27 bp):   
TACCCCTGATGGACAAAATTACGATAT
Done.