Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017232.1 Corchorus olitorius cultivar O-4 contig17265, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29878

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
271--474
105
2.0
103
86
4
286
49
1
12
35
1.52
9052--9152
31
3.3
31
77
4
98
35
8
27
27
1.87
10899--10939
16
2.6
16
78
17
50
63
0
4
31
1.15
10897--10944
17
2.9
16
81
12
53
64
0
4
31
1.12
11856--11881
6
4.3
6
100
0
52
84
0
0
15
0.62
11947--12043
35
2.8
34
75
12
90
64
1
11
22
1.31
11995--12046
21
2.4
21
80
3
59
69
0
9
21
1.17
13397--13770
54
7.0
54
89
3
485
32
23
18
25
1.97
13646--13748
53
2.1
45
83
15
118
33
21
21
23
1.97
13743--14089
35
9.9
35
92
0
552
37
21
13
27
1.91
29127--29162
16
2.2
16
90
0
54
38
16
5
38
1.72

Tables:   1

The End!