Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017236.1 Corchorus olitorius cultivar O-4 contig17269, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  28307

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6062--6120
21
2.8
21
80
10
66
49
13
15
22
1.79
6124--6228
22
4.7
23
79
8
87
37
11
12
39
1.79
7858--7917
30
2.0
30
83
6
77
35
18
5
41
1.72
8837--8898
31
2.0
31
90
0
97
32
20
4
41
1.74
10653--10756
42
2.4
43
92
6
167
33
13
2
50
1.57
11723--11792
22
3.2
22
76
11
81
34
8
11
45
1.71
11715--11780
21
3.1
21
77
12
80
39
7
10
42
1.68
18418--18459
22
1.9
22
95
0
75
26
9
21
42
1.83
21846--21889
22
2.0
22
86
0
61
25
11
20
43
1.85
22158--22198
12
3.7
11
81
12
57
2
46
0
51
1.14
24673--24704
11
2.8
11
95
4
55
62
9
9
18
1.52
27273--27355
22
3.8
21
73
17
64
57
1
2
38
1.19
27626--27654
9
3.2
9
100
0
58
20
48
20
10
1.79

Tables:   1

The End!