Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017237.1 Corchorus olitorius cultivar O-4 contig17270, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2137
ACGTcount: A:0.33, C:0.20, G:0.14, T:0.33


Found at i:292 original size:9 final size:9

Alignment explanation


    Indices: 280--308  Score: 58
    Period size: 9  Copynumber: 3.2  Consensus size: 9

        270 AGTCAAGAGG

                     
        280 CCCAAGTGC
          1 CCCAAGTGC

                     
        289 CCCAAGTGC
          1 CCCAAGTGC

                     
        298 CCCAAGTGC
          1 CCCAAGTGC

              
        307 CC
          1 CC

        309 TCATCATAGA


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   9   20  1.00

ACGTcount: A:0.21, C:0.48, G:0.21, T:0.10


Consensus pattern (9 bp):   
CCCAAGTGC
Done.