Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001724.1 Corchorus olitorius cultivar O-4 contig01724, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2587
ACGTcount: A:0.28, C:0.15, G:0.19, T:0.38


Found at i:174 original size:12 final size:13

Alignment explanation


    Indices: 156--185  Score: 53
    Period size: 12  Copynumber: 2.4  Consensus size: 13

        146 GTTTTCTTTA

                         
        156 ATTTTCTTGATTG
          1 ATTTTCTTGATTG

                         
        169 -TTTTCTTGATTG
          1 ATTTTCTTGATTG

                 
        181 ATTTT
          1 ATTTT

        186 AATTGTTAGT


Statistics
Matches: 16,  Mismatches: 0, Indels: 2
        0.89            0.00        0.11

Matches are distributed among these distances:
  12   12  0.75
  13    4  0.25

ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67


Consensus pattern (13 bp):   
ATTTTCTTGATTG

Found at i:1489 original size:22 final size:22

Alignment explanation


    Indices: 1463--1504  Score: 84
    Period size: 22  Copynumber: 1.9  Consensus size: 22

       1453 CTTGTTCTGA

                                  
       1463 CAATGTATTTATGGTTGTGAGC
          1 CAATGTATTTATGGTTGTGAGC

                                
       1485 CAATGTATTTATGGTTGTGA
          1 CAATGTATTTATGGTTGTGA

       1505 TGATTCTCTT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   20  1.00

ACGTcount: A:0.24, C:0.07, G:0.26, T:0.43


Consensus pattern (22 bp):   
CAATGTATTTATGGTTGTGAGC
Done.