Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017241.1 Corchorus olitorius cultivar O-4 contig17274, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32879

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
838--899
32
1.9
33
87
9
92
50
6
9
33
1.61
2889--2956
6
11.3
6
76
14
52
76
16
7
0
1.00
2889--2955
11
6.2
11
72
10
66
76
16
7
0
1.01
2889--2970
32
3.1
26
75
24
82
75
15
8
0
1.03
2898--2971
32
2.3
32
100
0
148
75
14
9
0
1.03
6524--6685
31
5.3
31
84
0
200
15
22
27
34
1.94
7633--7736
51
2.0
51
98
0
199
37
10
11
40
1.76
8013--8102
46
2.0
46
88
4
137
35
26
14
23
1.93
13016--13056
20
2.0
21
86
13
59
43
2
21
31
1.66
23883--23916
4
8.5
4
100
0
68
76
0
0
23
0.79
30629--30691
31
2.0
31
87
0
90
26
19
17
36
1.94
30892--30937
23
2.0
23
82
0
56
6
36
4
52
1.47
32077--32136
30
2.0
30
100
0
120
33
23
16
26
1.96
32386--32540
79
2.0
79
88
2
231
42
22
10
23
1.85

Tables:   1

The End!