Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017245.1 Corchorus olitorius cultivar O-4 contig17278, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  21944

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--241
123
1.9
129
90
8
395
50
1
11
36
1.47
1824--1951
22
5.8
22
73
5
89
44
9
10
35
1.72
1824--1917
44
2.1
43
82
7
109
47
9
9
32
1.68
1845--1952
44
2.5
44
78
6
112
44
8
12
35
1.72
2001--2094
22
4.3
21
81
8
82
44
5
17
32
1.71
2202--2327
22
5.7
22
69
9
87
37
12
14
35
1.84
2161--2281
44
2.8
42
79
14
129
33
14
14
38
1.86
2161--2325
44
3.8
41
74
14
111
35
13
14
36
1.86
2161--2347
66
2.8
66
74
6
173
35
13
14
36
1.86
17701--17730
15
1.9
16
93
6
53
46
0
3
50
1.18
17737--17771
2
17.5
2
100
0
70
48
0
0
51
1.00
21439--21489
13
3.9
13
79
7
59
19
13
9
56
1.65
21461--21616
31
4.9
31
86
6
181
16
14
10
58
1.63
21481--21569
18
5.5
18
67
24
81
15
15
6
61
1.53
21461--21616
62
2.5
64
86
5
201
16
14
10
58
1.63
21593--21627
13
2.7
13
90
0
61
14
14
14
57
1.66
21561--21660
44
2.2
45
92
5
166
17
13
18
52
1.75
21680--21755
32
2.4
32
100
0
152
17
11
10
60
1.58

Tables:   1

The End!