Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017246.1 Corchorus olitorius cultivar O-4 contig17279, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 16944
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33


Found at i:3017 original size:14 final size:14

Alignment explanation


    Indices: 2998--3030  Score: 66
    Period size: 14  Copynumber: 2.4  Consensus size: 14

       2988 CCGACACTAC

                          
       2998 AAATACATCCTGAT
          1 AAATACATCCTGAT

                          
       3012 AAATACATCCTGAT
          1 AAATACATCCTGAT

                 
       3026 AAATA
          1 AAATA

       3031 ATAGCTATAT


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   19  1.00

ACGTcount: A:0.48, C:0.18, G:0.06, T:0.27


Consensus pattern (14 bp):   
AAATACATCCTGAT

Found at i:8582 original size:26 final size:27

Alignment explanation


    Indices: 8553--8607  Score: 83
    Period size: 30  Copynumber: 1.9  Consensus size: 27

       8543 AAATTGCAAG

                                          
       8553 AAAATTAGAATAGTTATTACATATCTAAAA
          1 AAAATTAGAATAGTTATTACATATCT---A

                                     
       8583 AAAATTAGAATAGTTATTACATATC
          1 AAAATTAGAATAGTTATTACATATC

       8608 ACACAACAAT


Statistics
Matches: 25,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  30   25  1.00

ACGTcount: A:0.51, C:0.07, G:0.07, T:0.35


Consensus pattern (27 bp):   
AAAATTAGAATAGTTATTACATATCTA
Done.