Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017247.1 Corchorus olitorius cultivar O-4 contig17280, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58391

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9131--9156
13
2.0
13
100
0
52
46
30
0
23
1.53
9155--9197
19
2.3
19
95
0
77
18
32
11
37
1.87
17488--17876
205
1.9
207
89
2
613
43
19
10
26
1.83
24514--24538
10
2.5
10
100
0
50
92
0
8
0
0.40
39306--39335
5
5.8
5
92
7
51
16
0
0
83
0.65
39306--39336
11
2.9
11
95
4
55
16
0
0
83
0.64
44125--44191
31
2.2
31
92
5
111
47
11
19
20
1.81
44310--44392
33
2.6
31
86
3
112
36
16
9
37
1.82
44369--44448
29
2.7
29
82
3
88
28
16
13
41
1.86
45273--45303
16
1.9
16
100
0
62
32
19
0
48
1.49
45371--45403
16
2.1
17
88
11
52
48
0
0
51
1.00
45431--45574
31
4.7
31
83
3
148
39
13
16
29
1.88
45434--45574
60
2.3
62
85
2
178
39
14
16
30
1.88
45704--45770
31
2.2
31
86
5
93
20
16
11
50
1.76
46391--46473
3
28.0
3
69
11
55
27
62
7
2
1.34
46390--46458
30
2.4
27
80
13
84
26
62
10
1
1.35
46389--46458
14
4.9
14
74
13
63
25
62
10
1
1.34
46408--46473
30
2.2
30
97
0
123
28
62
6
3
1.34
46397--46466
30
2.7
24
73
23
68
28
62
7
1
1.30
56661--56693
13
2.4
14
95
5
59
60
0
0
39
0.97

Tables:   1

The End!