Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017249.1 Corchorus olitorius cultivar O-4 contig17282, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95824

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9084--9460
76
5.1
76
82
7
472
21
35
27
15
1.94
9208--9341
64
2.1
64
90
2
207
23
37
25
14
1.92
9132--9395
140
1.9
140
90
0
420
22
36
26
14
1.93
9467--9535
35
2.0
35
94
5
122
39
23
20
17
1.92
12476--12517
22
2.0
22
90
4
68
61
21
0
16
1.34
14110--14198
46
2.0
45
93
2
151
38
23
4
33
1.75
14287--14401
56
2.1
56
96
0
212
24
11
31
33
1.90
14906--14933
12
2.3
12
100
0
56
17
0
0
82
0.68
16628--16950
160
2.0
160
95
0
583
37
13
14
34
1.86
19050--19104
12
4.8
12
78
10
53
40
0
3
56
1.17
20525--20586
27
2.2
28
83
13
76
50
4
0
45
1.23
22603--22812
21
10.0
21
94
1
350
24
17
22
35
1.95
22880--22954
21
3.6
21
90
1
107
29
13
22
34
1.92
22738--22996
142
1.8
142
89
1
412
30
13
22
34
1.92
25627--25667
21
2.1
18
86
13
55
70
0
0
29
0.87
26020--26086
2
35.5
2
82
11
79
0
55
0
44
0.99
26023--26086
28
2.4
26
89
5
92
0
56
0
43
0.99
29438--29485
19
2.5
19
74
12
53
29
0
4
66
1.10
29904--29945
6
7.0
6
97
0
75
19
33
47
0
1.49
32013--32069
25
2.4
24
85
5
71
35
1
3
59
1.25
33554--33627
22
3.4
22
78
0
76
39
5
16
39
1.71
33863--33939
22
3.5
22
80
3
93
40
5
18
36
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33783--33938
43
3.7
43
75
11
126
39
7
16
37
1.76
33879--34310
22
20.2
22
69
15
135
37
8
16
38
1.79
34656--34687
2
16.0
2
100
0
64
50
0
0
50
1.00
35972--36039
27
2.5
27
92
4
102
19
14
47
19
1.83
35972--36028
27
2.1
27
100
0
114
19
14
45
21
1.85
36310--36351
20
2.1
20
90
0
66
54
0
7
38
1.28
38133--38171
20
2.0
20
89
0
60
12
2
17
66
1.35
40373--40427
12
4.2
13
84
13
60
70
1
1
25
1.06
40392--40427
6
5.8
6
90
3
54
77
0
0
22
0.76
44020--44088
30
2.3
31
78
9
81
33
26
20
20
1.97
55322--55352
1
31.0
1
100
0
62
0
0
0
100
0.00
58616--58645
6
5.2
6
92
8
53
83
0
16
0
0.65
63530--63559
9
3.4
9
90
9
53
90
0
0
10
0.47
63530--63560
8
3.8
8
95
4
53
87
0
0
12
0.55
65858--66408
40
13.6
41
79
8
583
35
20
25
17
1.95
65816--66408
81
7.3
81
83
5
586
35
20
25
18
1.95
65858--66408
162
3.4
162
81
7
647
35
20
25
17
1.95
69624--69656
13
2.5
13
90
0
57
6
6
12
75
1.16
72269--72323
21
2.6
21
88
0
74
16
49
21
12
1.79
72663--72692
15
2.1
14
93
6
51
13
16
6
63
1.50
75581--75622
15
2.7
15
92
3
66
11
9
14
64
1.50
85746--85790
22
2.0
22
95
0
81
22
33
26
17
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
89269--89315
23
2.0
23
100
0
94
29
17
31
21
1.96

Tables:   1

The End!