Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017250.1 Corchorus olitorius cultivar O-4 contig17283, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57653

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6430--6524
41
2.3
41
85
3
120
23
16
13
46
1.83
11281--11306
11
2.4
11
100
0
52
7
15
7
69
1.35
12066--12107
15
2.7
15
92
3
66
11
9
14
64
1.50
12392--12445
24
2.2
25
90
9
85
50
9
9
31
1.66
12392--12495
26
4.3
24
68
17
81
46
8
11
33
1.71
15681--15735
21
2.6
21
85
0
65
18
49
20
12
1.79
18227--18252
11
2.4
11
100
0
52
7
15
7
69
1.35
19012--19052
15
2.6
16
80
7
57
17
7
12
63
1.50
24835--24864
6
4.8
6
95
4
51
80
0
20
0
0.72
34968--35009
15
2.7
15
88
3
57
11
9
16
61
1.55
35388--35484
31
3.1
30
79
8
104
34
7
13
45
1.71
35412--35488
33
2.4
32
84
6
93
38
7
11
41
1.71
37973--38022
21
2.4
21
89
0
73
16
48
24
12
1.79
38379--38408
15
2.1
14
93
6
51
13
16
6
63
1.50
41301--41342
15
2.7
15
88
3
57
11
9
16
61
1.55
41632--41923
35
8.3
35
80
3
300
18
17
20
43
1.89
41632--41923
70
4.2
70
83
5
356
18
17
20
43
1.89
41653--41924
139
2.0
140
89
3
424
18
17
19
44
1.87
43029--43075
26
1.9
24
87
12
69
27
27
4
40
1.75
43520--43560
21
2.0
21
85
9
57
34
9
26
29
1.88
48707--48780
29
2.6
28
85
4
96
33
25
17
22
1.96
50180--50905
71
10.3
70
85
4
852
44
21
17
17
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50163--50905
106
7.0
104
85
4
819
43
21
17
17
1.87
50180--50952
35
22.0
35
80
5
808
43
21
17
17
1.88

Tables:   1

The End!