Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017255.1 Corchorus olitorius cultivar O-4 contig17288, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48031

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1373--1419
25
1.9
24
95
4
85
55
8
6
29
1.55
8588--8643
27
2.1
27
96
0
103
30
14
19
35
1.91
14897--14947
19
2.7
19
77
14
61
50
1
0
47
1.12
21680--21780
47
2.2
47
83
11
122
18
20
4
55
1.61
21754--21925
65
2.6
65
88
5
265
11
23
6
57
1.58
21758--21930
87
2.0
87
84
0
229
12
23
6
57
1.59
21758--21930
22
7.9
22
84
1
222
12
23
6
57
1.59
21921--22321
141
2.8
140
87
2
552
26
20
6
46
1.76
21921--22321
47
8.5
47
87
2
482
26
20
6
46
1.76
35382--35412
15
2.1
15
93
0
53
48
0
0
51
1.00
35359--35409
19
2.7
18
82
8
66
50
0
1
47
1.12
40826--40922
48
2.0
48
100
0
194
41
25
4
28
1.74
41598--41850
129
1.9
130
85
6
343
26
20
9
43
1.82
41892--41924
13
2.5
13
90
0
57
90
6
3
0
0.52
42758--42786
14
2.0
15
93
6
51
27
10
0
62
1.28
42758--42790
8
4.4
8
85
14
52
27
12
0
60
1.32
42758--42804
22
2.1
22
85
14
62
25
10
2
61
1.39
42695--42881
93
2.0
93
90
0
293
34
13
1
50
1.51
42781--43006
71
3.2
70
69
17
196
34
10
2
52
1.48
43030--43055
12
2.2
12
100
0
52
46
7
0
46
1.31
43529--43611
25
3.3
25
100
0
166
27
7
3
61
1.39
46465--46541
27
2.9
27
86
0
100
18
16
24
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46966--46995
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!