Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017256.1 Corchorus olitorius cultivar O-4 contig17289, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33168

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3207--3462
104
2.4
104
89
3
379
41
8
8
42
1.65
4494--4565
7
11.3
7
88
10
68
40
0
8
51
1.32
4497--4567
2
33.0
2
75
13
61
40
0
7
52
1.29
4497--4567
15
4.7
14
73
13
61
40
0
7
52
1.29
4973--5042
33
2.1
33
89
7
106
24
14
5
55
1.60
5201--5338
68
2.0
68
100
0
276
36
20
5
37
1.77
6226--6747
163
3.2
163
89
3
757
29
19
18
32
1.96
6748--6830
32
2.6
32
86
5
105
34
16
28
19
1.94
7235--7312
21
3.8
21
86
3
97
32
11
21
34
1.89
7821--7854
14
2.4
14
90
0
50
26
8
0
64
1.22
7882--7912
15
2.1
15
100
0
62
19
6
12
61
1.53
9494--9562
34
2.0
34
94
5
122
26
18
27
27
1.98
9533--9800
59
4.5
60
94
1
468
36
15
16
30
1.90
9528--9800
119
2.3
119
95
0
483
36
15
16
31
1.90
11881--12054
86
2.0
86
97
0
330
33
22
6
36
1.81
13891--13924
17
2.0
17
100
0
68
41
23
17
17
1.90
13922--14036
31
3.7
31
86
0
140
32
18
22
26
1.97
18297--18404
48
2.3
46
87
4
144
55
5
16
22
1.62
19670--19707
9
4.3
9
90
3
60
31
23
0
44
1.54
19670--19707
18
2.2
17
95
4
67
31
23
0
44
1.54
27954--28003
15
3.3
15
91
0
73
18
26
14
42
1.87
28863--28970
48
2.3
46
87
4
144
55
5
16
22
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30235--30272
9
4.3
9
90
3
60
31
23
0
44
1.54
30235--30272
18
2.2
17
95
4
67
31
23
0
44
1.54

Tables:   1

The End!