Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017257.1 Corchorus olitorius cultivar O-4 contig17290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 37341
ACGTcount: A:0.32, C:0.20, G:0.17, T:0.31
Found at i:5277 original size:30 final size:30
Alignment explanation
Indices: 5242--5298 Score: 114
Period size: 30 Copynumber: 1.9 Consensus size: 30
5232 ACTGGTGAAA
5242 TTTTGGCTTATTCCGAGATCGTTTGCAACT
1 TTTTGGCTTATTCCGAGATCGTTTGCAACT
5272 TTTTGGCTTATTCCGAGATCGTTTGCA
1 TTTTGGCTTATTCCGAGATCGTTTGCA
5299 TTCTTTTCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.16, C:0.19, G:0.21, T:0.44
Consensus pattern (30 bp):
TTTTGGCTTATTCCGAGATCGTTTGCAACT
Found at i:6017 original size:51 final size:50
Alignment explanation
Indices: 5916--6018 Score: 113
Period size: 51 Copynumber: 2.0 Consensus size: 50
5906 GTTCTTCATA
* *
5916 TTTTTCTTGTTTAGATCTTGTCTCAGGACAATCAAACACTCTTTTAGTGT
1 TTTTTCTTGTTTAGATCTTGTCTCAGGACAATAAAACACTCTATTAGTGT
* *
5966 TTTTCTCTTGTTTCA-ATCTTGTCT-ACGGAC-ATAAAAACACTGTATTCGTGT
1 TTTT-TCTTGTTT-AGATCTTGTCTCA-GGACAAT-AAAACACTCTATTAGTGT
6017 TT
1 TT
6019 CTCTTTCAGA
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
50 7 0.16
51 37 0.82
52 1 0.02
ACGTcount: A:0.22, C:0.18, G:0.14, T:0.46
Consensus pattern (50 bp):
TTTTTCTTGTTTAGATCTTGTCTCAGGACAATAAAACACTCTATTAGTGT
Found at i:6582 original size:37 final size:37
Alignment explanation
Indices: 6541--6611 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
6531 ACATAATTAT
*
6541 TCATAAAGTTATGTATATTTGAAAAGACATGTATCGA
1 TCATAAAGTTATGTATATATGAAAAGACATGTATCGA
*
6578 TCATAAAGTTATGTCTATATGAAAAGACATGTAT
1 TCATAAAGTTATGTATATATGAAAAGACATGTAT
6612 GTTGATCAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.41, C:0.08, G:0.15, T:0.35
Consensus pattern (37 bp):
TCATAAAGTTATGTATATATGAAAAGACATGTATCGA
Found at i:9091 original size:37 final size:37
Alignment explanation
Indices: 9050--9120 Score: 124
Period size: 37 Copynumber: 1.9 Consensus size: 37
9040 ACATAATTAT
* *
9050 TCATAAAGTTATGTCTATTTGGAAAGACATGTATTGA
1 TCATAAAGTTATGTCTATATGAAAAGACATGTATTGA
9087 TCATAAAGTTATGTCTATATGAAAAGACATGTAT
1 TCATAAAGTTATGTCTATATGAAAAGACATGTAT
9121 GTTGATCAAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (37 bp):
TCATAAAGTTATGTCTATATGAAAAGACATGTATTGA
Found at i:10089 original size:20 final size:19
Alignment explanation
Indices: 10064--10102 Score: 60
Period size: 20 Copynumber: 2.0 Consensus size: 19
10054 AAAAGCTAAG
10064 AAAAGAAAAAAACAAAAACA
1 AAAAGAAAAAAA-AAAAACA
*
10084 AAAAGAAAGAAAAAAAACA
1 AAAAGAAAAAAAAAAAACA
10103 GTGGGTGGTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (19 bp):
AAAAGAAAAAAAAAAAACA
Found at i:10320 original size:16 final size:16
Alignment explanation
Indices: 10301--10349 Score: 89
Period size: 16 Copynumber: 3.0 Consensus size: 16
10291 AACCTGTTCG
10301 AACCCGAACCCAAAAA
1 AACCCGAACCCAAAAA
10317 AACCCGAACCCAAAAA
1 AACCCGAACCCAAAAA
10333 AACCCGAACCCGAAAAA
1 AACCCGAACCC-AAAAA
10350 GTTCAAACCC
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
16 27 0.84
17 5 0.16
ACGTcount: A:0.55, C:0.37, G:0.08, T:0.00
Consensus pattern (16 bp):
AACCCGAACCCAAAAA
Found at i:10358 original size:16 final size:16
Alignment explanation
Indices: 10338--10381 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
10328 AAAAAAACCC
*
10338 GAACCCGAAAAAGTTCA
1 GAACCCGAAAAAATT-A
10355 -AACCCGAAAAAATTA
1 GAACCCGAAAAAATTA
10370 GAACCCGAAAAA
1 GAACCCGAAAAA
10382 TCTGAAACCC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 1 0.04
16 24 0.96
ACGTcount: A:0.55, C:0.23, G:0.14, T:0.09
Consensus pattern (16 bp):
GAACCCGAAAAAATTA
Found at i:10359 original size:32 final size:32
Alignment explanation
Indices: 10301--10410 Score: 105
Period size: 32 Copynumber: 3.4 Consensus size: 32
10291 AACCTGTTCG
* * * * *
10301 AACCCGAACCCAAAAAAACCCGAACCCAAAAA
1 AACCCGAACCCGAAAAATCTCAAACCCGAAAA
10333 AACCCGAACCCGAAAAAGT-TCAAACCCGAAAA
1 AACCCGAACCCGAAAAA-TCTCAAACCCGAAAA
*** * *
10365 AATTAGAACCCGAAAAATCTGAAACCCGATAA
1 AACCCGAACCCGAAAAATCTCAAACCCGAAAA
*
10397 AACCCAAACCCGAA
1 AACCCGAACCCGAA
10411 CCTGAAAAAA
Statistics
Matches: 62, Mismatches: 14, Indels: 4
0.77 0.17 0.05
Matches are distributed among these distances:
31 1 0.02
32 61 0.98
ACGTcount: A:0.52, C:0.32, G:0.10, T:0.06
Consensus pattern (32 bp):
AACCCGAACCCGAAAAATCTCAAACCCGAAAA
Found at i:10390 original size:16 final size:14
Alignment explanation
Indices: 10339--10398 Score: 57
Period size: 16 Copynumber: 3.8 Consensus size: 14
10329 AAAAAACCCG
10339 AACCCGAAAAAGTTCA
1 AACCCGAAAAA-TT-A
10355 AACCCGAAAAAATTA
1 AACCCG-AAAAATTA
10370 GAACCCGAAAAATCTGA
1 -AACCCGAAAAAT-T-A
10387 AACCCGATAAAA
1 AACCCGA-AAAA
10399 CCCAAACCCG
Statistics
Matches: 39, Mismatches: 0, Indels: 9
0.81 0.00 0.19
Matches are distributed among these distances:
15 7 0.18
16 22 0.56
17 10 0.26
ACGTcount: A:0.53, C:0.23, G:0.12, T:0.12
Consensus pattern (14 bp):
AACCCGAAAAATTA
Found at i:10654 original size:32 final size:32
Alignment explanation
Indices: 10618--10710 Score: 107
Period size: 32 Copynumber: 2.9 Consensus size: 32
10608 AACCCGGCCT
* *
10618 CGAATTAATCTGACCCAAAATTAA-CCAGAACC
1 CGAATCAACCTGACCCAAAATTAATCC-GAACC
* *
10650 CGAATCGACCTGACCCAAATTTAATCCGAACC
1 CGAATCAACCTGACCCAAAATTAATCCGAACC
* * *
10682 CGAATCAACCCGATCCAAATTTAATCCGA
1 CGAATCAACCTGACCCAAAATTAATCCGA
10711 CCTGATCTGA
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
32 51 0.96
33 2 0.04
ACGTcount: A:0.39, C:0.31, G:0.11, T:0.19
Consensus pattern (32 bp):
CGAATCAACCTGACCCAAAATTAATCCGAACC
Found at i:10710 original size:16 final size:16
Alignment explanation
Indices: 10661--10712 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
10651 GAATCGACCT
10661 GACCCAAATTTAATCC
1 GACCCAAATTTAATCC
* * *
10677 GAACCCGAA-TCAACCC
1 G-ACCCAAATTTAATCC
*
10693 GATCCAAATTTAATCC
1 GACCCAAATTTAATCC
10709 GACC
1 GACC
10713 TGATCTGAAC
Statistics
Matches: 26, Mismatches: 8, Indels: 4
0.68 0.21 0.11
Matches are distributed among these distances:
15 5 0.19
16 15 0.58
17 6 0.23
ACGTcount: A:0.37, C:0.35, G:0.10, T:0.19
Consensus pattern (16 bp):
GACCCAAATTTAATCC
Found at i:11049 original size:2 final size:2
Alignment explanation
Indices: 11042--11075 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
11032 TCTCAAAAGA
11042 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11076 TAGGTTTGTA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12017 original size:66 final size:66
Alignment explanation
Indices: 11947--12080 Score: 259
Period size: 66 Copynumber: 2.0 Consensus size: 66
11937 GGAGAGGGAA
*
11947 AATAATATGTAAAACCATGTGAAAAAAATATAATATCTCATGAAGTAACTGTCAAATCTTATAAA
1 AATAACATGTAAAACCATGTGAAAAAAATATAATATCTCATGAAGTAACTGTCAAATCTTATAAA
12012 G
66 G
12013 AATAACATGTAAAACCATGTGAAAAAAATATAATATCTCATGAAGTAACTGTCAAATCTTATAAA
1 AATAACATGTAAAACCATGTGAAAAAAATATAATATCTCATGAAGTAACTGTCAAATCTTATAAA
12078 G
66 G
12079 AA
1 AA
12081 CAGAAAATGA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
66 67 1.00
ACGTcount: A:0.51, C:0.11, G:0.10, T:0.28
Consensus pattern (66 bp):
AATAACATGTAAAACCATGTGAAAAAAATATAATATCTCATGAAGTAACTGTCAAATCTTATAAA
G
Found at i:13737 original size:28 final size:29
Alignment explanation
Indices: 13705--13763 Score: 93
Period size: 31 Copynumber: 2.0 Consensus size: 29
13695 ACATAACACC
13705 ACTCCAAGATG-AGCTTTTAAATTAAGAA
1 ACTCCAAGATGAAGCTTTTAAATTAAGAA
13733 ACTCCAAGATGATCAGCTTTTAAATTAAGAA
1 ACTCCAAGATGA--AGCTTTTAAATTAAGAA
13764 CACACTATTA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
28 11 0.39
31 17 0.61
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (29 bp):
ACTCCAAGATGAAGCTTTTAAATTAAGAA
Found at i:15084 original size:16 final size:16
Alignment explanation
Indices: 15060--15090 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
15050 ACTTCACACT
15060 ATTAGTGTTCTTTATG
1 ATTAGTGTTCTTTATG
*
15076 ATTATTGTTCTTTAT
1 ATTAGTGTTCTTTAT
15091 AATGTTTGGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.06, G:0.13, T:0.61
Consensus pattern (16 bp):
ATTAGTGTTCTTTATG
Found at i:18492 original size:31 final size:31
Alignment explanation
Indices: 18454--18546 Score: 177
Period size: 31 Copynumber: 3.0 Consensus size: 31
18444 GAGTTTTGTA
18454 AAACTTTTGAATCGCCTATTATACCCTTATT
1 AAACTTTTGAATCGCCTATTATACCCTTATT
18485 AAACTTTTGAATCGCCTATTATACCCTTATT
1 AAACTTTTGAATCGCCTATTATACCCTTATT
*
18516 AAACTTTTGAATCGCCTATTGTACCCTTATT
1 AAACTTTTGAATCGCCTATTATACCCTTATT
18547 TTTTGAATAT
Statistics
Matches: 61, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 61 1.00
ACGTcount: A:0.28, C:0.23, G:0.08, T:0.42
Consensus pattern (31 bp):
AAACTTTTGAATCGCCTATTATACCCTTATT
Found at i:18741 original size:93 final size:93
Alignment explanation
Indices: 18582--18769 Score: 277
Period size: 93 Copynumber: 2.0 Consensus size: 93
18572 TTGTTTAAAT
* ** *
18582 TTTTATAGTTTTAGTCAACTAAAAAATCTATTTTTATTTAATTAAATCTAATATCTTTCTAACTA
1 TTTTATAGTTTTACTCAACTAAAAAATCTATTTTTATTTAATTAAATCTAATATCCGTATAACTA
* *
18647 TTTTATTTTTACCATTTTACTATTTTAA
66 TTTTATTTTTACCATATTACTAATTTAA
** * *
18675 TTTTATAGTTTTACTCAACTAAAACCTCTATTTTTATTTATTTAAATCTAATATCCGTATACCTA
1 TTTTATAGTTTTACTCAACTAAAAAATCTATTTTTATTTAATTAAATCTAATATCCGTATAACTA
*
18740 TTTTATTTTTACGATATTACTAATTTAA
66 TTTTATTTTTACCATATTACTAATTTAA
18768 TT
1 TT
18770 AAAAAACTTA
Statistics
Matches: 84, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 84 1.00
ACGTcount: A:0.32, C:0.12, G:0.03, T:0.53
Consensus pattern (93 bp):
TTTTATAGTTTTACTCAACTAAAAAATCTATTTTTATTTAATTAAATCTAATATCCGTATAACTA
TTTTATTTTTACCATATTACTAATTTAA
Found at i:22265 original size:13 final size:12
Alignment explanation
Indices: 22247--22276 Score: 51
Period size: 13 Copynumber: 2.4 Consensus size: 12
22237 GCTTTAAACT
22247 AAAAAAAAGAATA
1 AAAAAAAAGAA-A
22260 AAAAAAAAGAAA
1 AAAAAAAAGAAA
22272 AAAAA
1 AAAAA
22277 CTAAACATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 6 0.35
13 11 0.65
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.03
Consensus pattern (12 bp):
AAAAAAAAGAAA
Found at i:24449 original size:29 final size:29
Alignment explanation
Indices: 24416--24503 Score: 140
Period size: 29 Copynumber: 3.0 Consensus size: 29
24406 GAACTAGTAG
* * *
24416 ATGACCATAATGCCCCTGAATGTGTAAAA
1 ATGACCAAAATGCCCCTGGATGTGCAAAA
24445 ATGACCAAAATGCCCCTGGATGTGCAAAA
1 ATGACCAAAATGCCCCTGGATGTGCAAAA
*
24474 ATGACCAAAATGCCACTGGATGTGCAAAA
1 ATGACCAAAATGCCCCTGGATGTGCAAAA
24503 A
1 A
24504 GGTCAATTGA
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 55 1.00
ACGTcount: A:0.40, C:0.22, G:0.19, T:0.19
Consensus pattern (29 bp):
ATGACCAAAATGCCCCTGGATGTGCAAAA
Found at i:24825 original size:58 final size:58
Alignment explanation
Indices: 24735--25194 Score: 740
Period size: 58 Copynumber: 7.8 Consensus size: 58
24725 TCTGAAATGT
* * * *
24735 AAACTCTCTGACAGAGACCTTGAACAGGATTTTAAAACAAGATGATATTTTGAATTGA
1 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
* * * *
24793 AAACTCTCTAGCAGTGACCTCGAACAGGATTTTAAAACAAGATGATATTTTGAATTGA
1 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
24851 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
1 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
*
24909 AAACTCTCTAACAGAGACCTCGAATAGGATTTTAAAACAAGATAAGATTTTGAATTGA
1 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
* **
24967 AAACTCTCTAACATAGACCTCGAACCTGATTTTTTTAAAACAAGATAAGATTTTGAATTGA
1 AAACTCTCTAACAGAGACCTCGAACAGGA---TTTTAAAACAAGATAAGATTTTGAATTGA
* *
25028 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAATAAGATAAGATTTTGAATTGC
1 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
*
25086 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGC
1 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
25144 AAACTCTCTAACAGAGACCTCGAACAGGATTTTTTAAAACAAGATAAGATT
1 AAACTCTCTAACAGAGACCTCGAACAGGA--TTTTAAAACAAGATAAGATT
25195 ACCTGACTGA
Statistics
Matches: 378, Mismatches: 19, Indels: 8
0.93 0.05 0.02
Matches are distributed among these distances:
58 303 0.80
60 20 0.05
61 55 0.15
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (58 bp):
AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
Found at i:25072 original size:177 final size:176
Alignment explanation
Indices: 24735--25194 Score: 755
Period size: 177 Copynumber: 2.6 Consensus size: 176
24725 TCTGAAATGT
* * * *
24735 AAACTCTCTGACAGAGACCTTGAACAGGATTTTAAAACAAGATGATATTTTGAATTGAAAACTCT
1 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGAAAACTCT
* * *
24800 CTAGCAGT-GACCTCGAACAGGA--TTTTAAAACAAGATGATATTTTGAATTGAAAACTCTCTAA
66 CTAACA-TAGACCTCGAACAGGATTTTTTAAAACAAGATAAGATTTTGAATTGAAAACTCTCTAA
24862 CAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
130 CAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
*
24909 AAACTCTCTAACAGAGACCTCGAATAGGATTTTAAAACAAGATAAGATTTTGAATTGAAAACTCT
1 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGAAAACTCT
**
24974 CTAACATAGACCTCGAACCTGATTTTTTTAAAACAAGATAAGATTTTGAATTGAAAACTCTCTAA
66 CTAACATAGACCTCGAACAGGA-TTTTTTAAAACAAGATAAGATTTTGAATTGAAAACTCTCTAA
* *
25039 CAGAGACCTCGAACAGGATTTTAAAATAAGATAAGATTTTGAATTGC
130 CAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
*
25086 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGCAAACTCT
1 AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGAAAACTCT
*
25151 CTAACAGAGACCTCGAACAGGATTTTTTAAAACAAGATAAGATT
66 CTAACATAGACCTCGAACAGGATTTTTTAAAACAAGATAAGATT
25195 ACCTGACTGA
Statistics
Matches: 265, Mismatches: 17, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
173 1 0.00
174 77 0.29
176 22 0.08
177 165 0.62
ACGTcount: A:0.41, C:0.16, G:0.15, T:0.28
Consensus pattern (176 bp):
AAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGAAAACTCT
CTAACATAGACCTCGAACAGGATTTTTTAAAACAAGATAAGATTTTGAATTGAAAACTCTCTAAC
AGAGACCTCGAACAGGATTTTAAAACAAGATAAGATTTTGAATTGA
Found at i:25175 original size:235 final size:236
Alignment explanation
Indices: 24764--25194 Score: 756
Period size: 235 Copynumber: 1.8 Consensus size: 236
24754 TTGAACAGGA
* * * *
24764 TTTTAAAACAAGATGATATTTTGAATTGAAAACTCTCTAGCAGTGACCTCGAACAGGATTTTAAA
1 TTTTAAAACAAGATAAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTAAA
* *
24829 ACAAGATGATATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGAT
66 ACAAGATAAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGAT
*
24894 AAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAATAGGA-TTTTAAAACAAGATAAGATT
131 AAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTTAAAACAAGATAAGATT
24958 TTGAATTGAAAACTCTCTAACATAGACCTCGAACCTGATTT
196 TTGAATTGAAAACTCTCTAACATAGACCTCGAACCTGATTT
24999 TTTTAAAACAAGATAAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTAAA
1 TTTTAAAACAAGATAAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTAAA
* *
25064 ATAAGATAAGATTTTGAATTGCAAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGAT
66 ACAAGATAAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGAT
*
25129 AAGATTTTGAATTGCAAACTCTCTAACAGAGACCTCGAACAGGATTTTTTAAAACAAGATAAGAT
131 AAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGA-TTTTTAAAACAAGATAAGAT
25194 T
195 T
25195 ACCTGACTGA
Statistics
Matches: 184, Mismatches: 10, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
235 164 0.89
237 20 0.11
ACGTcount: A:0.41, C:0.15, G:0.15, T:0.29
Consensus pattern (236 bp):
TTTTAAAACAAGATAAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTAAA
ACAAGATAAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTAAAACAAGAT
AAGATTTTGAATTGAAAACTCTCTAACAGAGACCTCGAACAGGATTTTTAAAACAAGATAAGATT
TTGAATTGAAAACTCTCTAACATAGACCTCGAACCTGATTT
Done.