Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017259.1 Corchorus olitorius cultivar O-4 contig17292, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50982

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
138--225
29
3.0
29
94
0
149
38
22
19
19
1.93
3828--3892
22
3.0
22
93
0
112
38
15
7
38
1.76
5680--5712
2
16.5
2
100
0
66
51
0
0
48
1.00
6451--6511
27
2.3
25
86
11
77
49
0
6
44
1.28
9116--9172
28
2.0
27
87
12
80
22
19
3
54
1.59
11277--11328
14
3.7
15
77
10
56
36
1
11
50
1.50
13459--13524
25
2.6
25
78
9
62
18
12
21
48
1.80
15439--15472
13
2.6
13
100
0
68
41
0
38
20
1.53
17481--17516
19
1.9
18
88
5
54
33
22
2
41
1.68
17808--17837
16
1.9
16
93
6
53
46
13
3
36
1.60
19013--19058
23
2.0
23
87
8
67
67
6
10
15
1.40
25794--26187
158
2.5
158
93
0
673
31
15
21
31
1.94
26426--26811
69
5.6
69
89
1
535
27
17
29
25
1.97
26380--26811
138
3.1
137
85
4
541
27
17
29
26
1.97
26380--26811
207
2.1
207
85
6
572
27
17
29
26
1.97
26380--26811
69
6.3
69
86
4
479
27
17
29
26
1.97
28056--28098
8
5.7
7
83
10
50
4
13
0
81
0.84
28056--28091
15
2.4
15
90
0
54
2
16
0
80
0.83
28064--28098
15
2.3
15
90
0
52
5
11
0
82
0.82
28385--28429
22
2.0
23
87
12
67
17
4
8
68
1.32
28398--28432
16
2.2
16
90
5
54
14
0
8
77
0.99
28386--28481
38
2.5
37
76
20
99
13
4
8
73
1.20
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28437--28481
19
2.4
19
78
10
56
11
2
6
80
0.99
28848--28908
7
8.6
7
96
3
113
13
13
0
73
1.09
30895--30954
15
4.0
15
73
0
57
13
35
20
31
1.91
35771--35817
8
5.9
8
80
9
51
8
17
0
74
1.05
35781--35828
23
2.1
23
84
3
62
8
18
0
72
1.08
42566--42602
12
3.2
12
77
14
51
67
8
8
16
1.40
44927--44985
15
4.1
15
73
22
63
50
13
0
35
1.42
47439--47668
52
4.4
52
88
7
299
40
14
16
28
1.87
47439--47669
103
2.2
103
85
7
299
41
14
16
28
1.87

Tables:   1

The End!