Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017261.1 Corchorus olitorius cultivar O-4 contig17294, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 72153
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:3183 original size:28 final size:28
Alignment explanation
Indices: 3124--3197 Score: 78
Period size: 28 Copynumber: 2.6 Consensus size: 28
3114 GGTCATCTAG
* *
3124 GGGCATTTTGGATCA-TTTGCACGTCCAG
1 GGGCATTTTGG-TCATTTTGCACATCCAA
* *
3152 GGGCATTTTGGTCATTTTGCATATTCAA
1 GGGCATTTTGGTCATTTTGCACATCCAA
* *
3180 GGGCATCTCGGTCATTTT
1 GGGCATTTTGGTCATTTT
3198 AAGCTCACTT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
27 3 0.08
28 36 0.92
ACGTcount: A:0.18, C:0.19, G:0.26, T:0.38
Consensus pattern (28 bp):
GGGCATTTTGGTCATTTTGCACATCCAA
Found at i:3500 original size:12 final size:12
Alignment explanation
Indices: 3480--3509 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
3470 CATTTTGTAC
*
3480 TTGGACTTGCTT
1 TTGGGCTTGCTT
3492 TTGGGCTTGCTT
1 TTGGGCTTGCTT
3504 TTGGGC
1 TTGGGC
3510 CTTTGTTGGT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.03, C:0.17, G:0.33, T:0.47
Consensus pattern (12 bp):
TTGGGCTTGCTT
Found at i:7705 original size:19 final size:18
Alignment explanation
Indices: 7681--7731 Score: 66
Period size: 19 Copynumber: 2.7 Consensus size: 18
7671 TTTTGCATTA
*
7681 TAATTAAATATTAATTAAT
1 TAATTAAA-ATTAATAAAT
7700 TAATTAAAATTAAATAAAT
1 TAATTAAAATT-AATAAAT
*
7719 AAATTAAAATTAA
1 TAATTAAAATTAA
7732 CTTGTATTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
18 5 0.17
19 24 0.83
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (18 bp):
TAATTAAAATTAATAAAT
Found at i:8103 original size:19 final size:19
Alignment explanation
Indices: 8085--8121 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8075 TATTAATTAT
*
8085 TTTA-ATATTATATTTTTA
1 TTTATATATTACATTTTTA
8103 TTTATATATTACATTTTTA
1 TTTATATATTACATTTTTA
8122 CATAAAAACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTATATATTACATTTTTA
Found at i:8258 original size:13 final size:13
Alignment explanation
Indices: 8240--8266 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8230 AAATATAATA
8240 AATATGATTTATG
1 AATATGATTTATG
8253 AATATGATTTATG
1 AATATGATTTATG
8266 A
1 A
8267 GGTTATAGAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.44
Consensus pattern (13 bp):
AATATGATTTATG
Found at i:9182 original size:20 final size:20
Alignment explanation
Indices: 9143--9183 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 20
9133 AATATTAACA
* *
9143 ATAAATTAGTATTTAGAAAT
1 ATAAATTAGTAATAAGAAAT
*
9163 ATAAATTAGTAATAATAAAT
1 ATAAATTAGTAATAAGAAAT
9183 A
1 A
9184 ATGCTAATAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.07, T:0.37
Consensus pattern (20 bp):
ATAAATTAGTAATAAGAAAT
Found at i:9883 original size:42 final size:44
Alignment explanation
Indices: 9836--9925 Score: 112
Period size: 45 Copynumber: 2.1 Consensus size: 44
9826 CATTACCTAA
** *
9836 ATTCTA-C-TCCATCTCTAGGTAATTCATCAAAATAAAGCAAAT
1 ATTCTACCGTCCATCTCTAAATAATTCATCAAAATAAAACAAAT
* *
9878 ATTCTACTCGTCCATCTCTAAATAATTCATCAAAGTAAAACTAAT
1 ATTCTAC-CGTCCATCTCTAAATAATTCATCAAAATAAAACAAAT
9923 ATT
1 ATT
9926 AATTGTTGTT
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
42 6 0.15
44 1 0.03
45 33 0.82
ACGTcount: A:0.40, C:0.21, G:0.06, T:0.33
Consensus pattern (44 bp):
ATTCTACCGTCCATCTCTAAATAATTCATCAAAATAAAACAAAT
Found at i:11401 original size:20 final size:20
Alignment explanation
Indices: 11378--11415 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
11368 CAATGTATTG
*
11378 AATAATTATCGTTAGTATCA
1 AATAATTATCCTTAGTATCA
*
11398 AATAGTTATCCTTAGTAT
1 AATAATTATCCTTAGTAT
11416 TTTTTAGACT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.11, G:0.11, T:0.42
Consensus pattern (20 bp):
AATAATTATCCTTAGTATCA
Found at i:15884 original size:25 final size:25
Alignment explanation
Indices: 15850--15899 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
15840 AAGTACTAGA
15850 ACTAAAAGTCCAGCACTCCACCACC
1 ACTAAAAGTCCAGCACTCCACCACC
15875 ACTAAAAGTCCAGCACTCCACCACC
1 ACTAAAAGTCCAGCACTCCACCACC
15900 GGAGGCTGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.36, C:0.44, G:0.08, T:0.12
Consensus pattern (25 bp):
ACTAAAAGTCCAGCACTCCACCACC
Found at i:23188 original size:65 final size:65
Alignment explanation
Indices: 23077--23200 Score: 171
Period size: 65 Copynumber: 1.9 Consensus size: 65
23067 GAACATTTTT
* * * * *
23077 ATGAAATTTTGATAACTACCATATTAAATTTTGATAATCACGCTATGAAATTTTGATAATTATCA
1 ATGAAATTGTGATAACTACCATATGAAATTTTGATAACCACACTATGAAATTTTAATAATTATCA
23142 ATGAAATTGTGATAAACT-CCATATGAAATTTTGATAACCTA-ACTATGAAATTTTAATAA
1 ATGAAATTGTGAT-AACTACCATATGAAATTTTGATAACC-ACACTATGAAATTTTAATAA
23201 ACTTTCCTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 4
0.85 0.08 0.07
Matches are distributed among these distances:
65 47 0.90
66 5 0.10
ACGTcount: A:0.42, C:0.10, G:0.10, T:0.38
Consensus pattern (65 bp):
ATGAAATTGTGATAACTACCATATGAAATTTTGATAACCACACTATGAAATTTTAATAATTATCA
Found at i:23214 original size:23 final size:22
Alignment explanation
Indices: 23076--23261 Score: 134
Period size: 22 Copynumber: 8.5 Consensus size: 22
23066 TGAACATTTT
*
23076 TATGAAATTTTGAT-AACTACC
1 TATGAAATTTTGATAAACTTCC
* * *
23097 ATATTAAATTTTGATAATC-ACGC
1 -TATGAAATTTTGATAAACTTC-C
*
23120 TATGAAATTTTGAT-AA-TTATC
1 TATGAAATTTTGATAAACTT-CC
* *
23141 AATGAAATTGTGATAAAC-TCC
1 TATGAAATTTTGATAAACTTCC
* **
23162 ATATGAAATTTTGATAACCTAAC
1 -TATGAAATTTTGATAAACTTCC
*
23185 TATGAAATTTTAATAAACTTTCC
1 TATGAAATTTTGATAAAC-TTCC
*
23208 TATGAAATTTTG-TAACCTTCC
1 TATGAAATTTTGATAAACTTCC
* * *
23229 TATG-ATTTTTGATAACCTCCC
1 TATGAAATTTTGATAAACTTCC
*
23250 TATGAGATTTTG
1 TATGAAATTTTG
23262 TTAATCTCCC
Statistics
Matches: 129, Mismatches: 24, Indels: 22
0.74 0.14 0.13
Matches are distributed among these distances:
20 6 0.05
21 35 0.27
22 71 0.55
23 17 0.13
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.40
Consensus pattern (22 bp):
TATGAAATTTTGATAAACTTCC
Found at i:23230 original size:21 final size:21
Alignment explanation
Indices: 23163--23262 Score: 94
Period size: 21 Copynumber: 4.6 Consensus size: 21
23153 ATAAACTCCA
**
23163 TATGAAATTTTGATAACCTAAC
1 TATGAAATTTTG-TAACCTTCC
* *
23185 TATGAAATTTTAATAAACTTTCC
1 TATGAAATTTT-GT-AACCTTCC
23208 TATGAAATTTTGTAACCTTCC
1 TATGAAATTTTGTAACCTTCC
* *
23229 TATG-ATTTTTGATAACCTCCC
1 TATGAAATTTTG-TAACCTTCC
*
23250 TATGAGATTTTGT
1 TATGAAATTTTGT
23263 TAATCTCCCT
Statistics
Matches: 64, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
20 6 0.09
21 24 0.38
22 18 0.28
23 16 0.25
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (21 bp):
TATGAAATTTTGTAACCTTCC
Found at i:23270 original size:22 final size:20
Alignment explanation
Indices: 23206--23280 Score: 80
Period size: 21 Copynumber: 3.6 Consensus size: 20
23196 AATAAACTTT
*
23206 CCTATGAAATTTTGTAACCTT
1 CCTATG-AATTTTGTAACCTC
*
23227 CCTATGATTTTTGATAACCTC
1 CCTATGAATTTTG-TAACCTC
*
23248 CCTATGAGATTTTGTTAATCTC
1 CCTATGA-ATTTTG-TAACCTC
23270 CCTAT-AATTTT
1 CCTATGAATTTT
23281 TTGATACTAT
Statistics
Matches: 47, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
20 11 0.23
21 20 0.43
22 16 0.34
ACGTcount: A:0.25, C:0.20, G:0.09, T:0.45
Consensus pattern (20 bp):
CCTATGAATTTTGTAACCTC
Found at i:23282 original size:22 final size:22
Alignment explanation
Indices: 23215--23286 Score: 67
Period size: 22 Copynumber: 3.4 Consensus size: 22
23205 TCCTATGAAA
* *
23215 TTTTG-TAACCTTCCTATGA-T
1 TTTTGATAACCTCCCTATAAGT
* *
23235 TTTTGATAACCTCCCTATGAGA
1 TTTTGATAACCTCCCTATAAGT
* * *
23257 TTTTGTTAATCTCCCTATAATT
1 TTTTGATAACCTCCCTATAAGT
23279 TTTTGATA
1 TTTTGATA
23287 CTATAGTATG
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
20 5 0.12
21 13 0.31
22 24 0.57
ACGTcount: A:0.24, C:0.18, G:0.10, T:0.49
Consensus pattern (22 bp):
TTTTGATAACCTCCCTATAAGT
Found at i:23586 original size:45 final size:45
Alignment explanation
Indices: 23522--23614 Score: 161
Period size: 45 Copynumber: 2.1 Consensus size: 45
23512 GGCAATCTAA
23522 TCCGGTTTAGCTTTTATAGTATGATTATAAGTTTAAAAATTCAAC
1 TCCGGTTTAGCTTTTATAGTATGATTATAAGTTTAAAAATTCAAC
*
23567 TCCGGTTTAG-TTCTTATAGTATGATTATACGTTTAAAAATTCAAC
1 TCCGGTTTAGCTT-TTATAGTATGATTATAAGTTTAAAAATTCAAC
23612 TCC
1 TCC
23615 TTTGAAAAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
44 2 0.04
45 44 0.96
ACGTcount: A:0.31, C:0.14, G:0.13, T:0.42
Consensus pattern (45 bp):
TCCGGTTTAGCTTTTATAGTATGATTATAAGTTTAAAAATTCAAC
Found at i:24876 original size:99 final size:100
Alignment explanation
Indices: 24727--24917 Score: 303
Period size: 99 Copynumber: 1.9 Consensus size: 100
24717 TATTATTTGC
* * * *
24727 TAATGGCAATTTAGAAATATATTTGGAAAAAAGGGTATAATCGGAAAACATAAAGTTTCCCCTTA
1 TAATGCCAATTTAGAAAAATATTTGGAAAAAAGGGTACAATCGGAAAACATAAAGTTTCCCATTA
* *
24792 TTCGTACTTTTATATATAGTATAGATAAATTTTAA
66 TTCGTAATTTTATACATAGTATAGATAAATTTTAA
* *
24827 TAATGCCATTTTAGAAAAATATTT-GAAAAAAGGGTACAATCGGAAAACATAAAGTTTTCCATTA
1 TAATGCCAATTTAGAAAAATATTTGGAAAAAAGGGTACAATCGGAAAACATAAAGTTTCCCATTA
24891 TTCGTAATTTTATACATAGTATAGATA
66 TTCGTAATTTTATACATAGTATAGATA
24918 GATAGATTTC
Statistics
Matches: 83, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
99 62 0.75
100 21 0.25
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.35
Consensus pattern (100 bp):
TAATGCCAATTTAGAAAAATATTTGGAAAAAAGGGTACAATCGGAAAACATAAAGTTTCCCATTA
TTCGTAATTTTATACATAGTATAGATAAATTTTAA
Found at i:25124 original size:22 final size:22
Alignment explanation
Indices: 25099--25155 Score: 114
Period size: 22 Copynumber: 2.6 Consensus size: 22
25089 TCAGTAATTA
25099 TGATGCAGTATTGATTCAGCCC
1 TGATGCAGTATTGATTCAGCCC
25121 TGATGCAGTATTGATTCAGCCC
1 TGATGCAGTATTGATTCAGCCC
25143 TGATGCAGTATTG
1 TGATGCAGTATTG
25156 TTAAATCATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (22 bp):
TGATGCAGTATTGATTCAGCCC
Found at i:28469 original size:33 final size:34
Alignment explanation
Indices: 28352--28490 Score: 163
Period size: 33 Copynumber: 3.9 Consensus size: 34
28342 GAACACTTTG
* *
28352 AAAACTTGATGGGAACTTTCCCACTTTGAAAACT
1 AAAACCTGATGGGAACTTTCCCAATTTGAAAACT
* * *
28386 AAAACCGAAAATGACGGGAACTTTCCCTAAATTGAAAAGT
1 AAAACC-----TGATGGGAACTTTCCC-AATTTGAAAACT
*
28426 AAAACTTGATGGGAACTTTCCCAATTT-AAAACT
1 AAAACCTGATGGGAACTTTCCCAATTTGAAAACT
28459 AAAACCTGATGGGAACTTTCCCAATTTGAAAA
1 AAAACCTGATGGGAACTTTCCCAATTTGAAAA
28491 GAGCTAAATT
Statistics
Matches: 88, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
33 31 0.35
34 13 0.15
35 15 0.17
39 15 0.17
40 14 0.16
ACGTcount: A:0.40, C:0.19, G:0.15, T:0.26
Consensus pattern (34 bp):
AAAACCTGATGGGAACTTTCCCAATTTGAAAACT
Found at i:31102 original size:19 final size:19
Alignment explanation
Indices: 31078--31114 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
31068 ATTCATTTCT
*
31078 TGAAAGAAAGGGAAAGGAA
1 TGAAAGAAAGGAAAAGGAA
31097 TGAAAGAAAGGAAAAGGA
1 TGAAAGAAAGGAAAAGGA
31115 GAATTGCTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.35, T:0.05
Consensus pattern (19 bp):
TGAAAGAAAGGAAAAGGAA
Found at i:34048 original size:38 final size:39
Alignment explanation
Indices: 34005--34153 Score: 212
Period size: 39 Copynumber: 3.8 Consensus size: 39
33995 AAAAAAAGAA
*
34005 ATTTCCAAAGTTTTCAATTTAGGGAAAGATCCCGTCTAG
1 ATTTCCAAAGTTTTCAATTTAGGGAAAGATCCCGTCCAG
*
34044 -TTTCCAAAGTTTTCAATTTAGGGAAAGATCCTGTCCAG
1 ATTTCCAAAGTTTTCAATTTAGGGAAAGATCCCGTCCAG
* * *
34082 TTTTTCAAAGTTATCAATTTAGGGAAAGA-CTCCGTCCAG
1 ATTTCCAAAGTTTTCAATTTAGGGAAAGATC-CCGTCCAG
* *
34121 ATTTTCAAAGTTTTCAATTTAGGGAAATATCCC
1 ATTTCCAAAGTTTTCAATTTAGGGAAAGATCCC
34154 ATCAAGTTTT
Statistics
Matches: 99, Mismatches: 8, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
38 37 0.37
39 61 0.62
40 1 0.01
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.35
Consensus pattern (39 bp):
ATTTCCAAAGTTTTCAATTTAGGGAAAGATCCCGTCCAG
Found at i:36259 original size:18 final size:18
Alignment explanation
Indices: 36236--36270 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
36226 AGGAAAGAGG
*
36236 TGGGCTTTAAAAAGGAAA
1 TGGGCTCTAAAAAGGAAA
*
36254 TGGGCTCTAAAATGGAA
1 TGGGCTCTAAAAAGGAA
36271 GACAACGATC
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.40, C:0.09, G:0.29, T:0.23
Consensus pattern (18 bp):
TGGGCTCTAAAAAGGAAA
Found at i:36554 original size:31 final size:31
Alignment explanation
Indices: 36516--36621 Score: 95
Period size: 31 Copynumber: 3.3 Consensus size: 31
36506 TCAAACTAAG
36516 AAAGACCTGTCTGAGGTCTAAACTAAAAGAT
1 AAAGACCTGTCTGAGGTCTAAACTAAAAGAT
* * * * *** * *
36547 AAAGACCTATCCGTGGTCGAGTTTGAAAACTAAG
1 AAAGACCTGTCTGAGGTCTAAACT-AAAA--GAT
*
36581 AAAGACTTGTCTGAGGTCTAAACTAAAAGAT
1 AAAGACCTGTCTGAGGTCTAAACTAAAAGAT
36612 AAAGACCTGT
1 AAAGACCTGT
36622 TGTAGACACC
Statistics
Matches: 52, Mismatches: 20, Indels: 6
0.67 0.26 0.08
Matches are distributed among these distances:
31 27 0.52
32 4 0.08
33 4 0.08
34 17 0.33
ACGTcount: A:0.40, C:0.16, G:0.21, T:0.24
Consensus pattern (31 bp):
AAAGACCTGTCTGAGGTCTAAACTAAAAGAT
Found at i:36906 original size:16 final size:15
Alignment explanation
Indices: 36873--36905 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
36863 AACTCTTGAT
36873 AAATGTCAAAGAAAA
1 AAATGTCAAAGAAAA
*
36888 AAATGTTAAAGAAAA
1 AAATGTCAAAGAAAA
36903 AAA
1 AAA
36906 AGAGGAGAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.70, C:0.03, G:0.12, T:0.15
Consensus pattern (15 bp):
AAATGTCAAAGAAAA
Found at i:38910 original size:21 final size:22
Alignment explanation
Indices: 38886--38926 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
38876 GAACCCATTT
*
38886 TTTTTGTCTC-ACTCTCTTTTC
1 TTTTTCTCTCGACTCTCTTTTC
*
38907 TTTTTCTCTCGACTTTCTTT
1 TTTTTCTCTCGACTCTCTTT
38927 CCTCTCTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.05, C:0.27, G:0.05, T:0.63
Consensus pattern (22 bp):
TTTTTCTCTCGACTCTCTTTTC
Found at i:40116 original size:21 final size:22
Alignment explanation
Indices: 40090--40137 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
40080 GTTTCCCCAT
* *
40090 TTTTTAGACATTC-TGTTTCTG
1 TTTTTAGACATCCTTGATTCTG
*
40111 TTTTTATACATCCTTGATTCTG
1 TTTTTAGACATCCTTGATTCTG
40133 TTTTT
1 TTTTT
40138 CAGTTTCCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 11 0.48
22 12 0.52
ACGTcount: A:0.15, C:0.15, G:0.10, T:0.60
Consensus pattern (22 bp):
TTTTTAGACATCCTTGATTCTG
Found at i:46358 original size:22 final size:21
Alignment explanation
Indices: 46333--46380 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
46323 ATGGAAACAG
* *
46333 AAAAACAGAATCAAGGATGTCT
1 AAAAACAGAAAC-AGAATGTCT
*
46355 AAAAATAGAAACAGAATGTCT
1 AAAAACAGAAACAGAATGTCT
46376 AAAAA
1 AAAAA
46381 ATGGGGAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 13 0.57
22 10 0.43
ACGTcount: A:0.58, C:0.10, G:0.15, T:0.17
Consensus pattern (21 bp):
AAAAACAGAAACAGAATGTCT
Found at i:47647 original size:20 final size:22
Alignment explanation
Indices: 47610--47660 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 22
47600 ATACAAGTAT
*
47610 ATATATATTTTCTGAATTATAA
1 ATATATATATTCTGAATTATAA
**
47632 ATATATATATT-T-AATTATTT
1 ATATATATATTCTGAATTATAA
47652 ATATATATA
1 ATATATATA
47661 ATAAAACTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 15 0.58
21 1 0.04
22 10 0.38
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (22 bp):
ATATATATATTCTGAATTATAA
Found at i:47653 original size:24 final size:24
Alignment explanation
Indices: 47608--47660 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
47598 GTATACAAGT
**
47608 ATATATATATTTTCTGAATTATAA
1 ATATATATATTTAATGAATTATAA
* * *
47632 ATATATATATTTAATTATTTATAT
1 ATATATATATTTAATGAATTATAA
47656 ATATA
1 ATATA
47661 ATAAAACTAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.43, C:0.02, G:0.02, T:0.53
Consensus pattern (24 bp):
ATATATATATTTAATGAATTATAA
Found at i:49972 original size:22 final size:23
Alignment explanation
Indices: 49950--49999 Score: 64
Period size: 23 Copynumber: 2.1 Consensus size: 23
49940 AAAAAATTTC
49950 ATTCAAAATTTTCAAAGTATTCA
1 ATTCAAAATTTTCAAAGTATTCA
** *
49973 ATTCAAGTTTTTCAAAGGTTTTCA
1 ATTCAAAATTTTCAAA-GTATTCA
49997 ATT
1 ATT
50000 TAGGGAAAGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
23 14 0.61
24 9 0.39
ACGTcount: A:0.36, C:0.12, G:0.08, T:0.44
Consensus pattern (23 bp):
ATTCAAAATTTTCAAAGTATTCA
Found at i:50065 original size:52 final size:52
Alignment explanation
Indices: 50002--50139 Score: 233
Period size: 52 Copynumber: 2.7 Consensus size: 52
49992 TTTCAATTTA
50002 GGGAAAGTTCCCATCAAGTTTTCAAAGCATTCAATTT-GAGTCTTTTCAAAGT
1 GGGAAAGTTCCCATCAAGTTTTCAAAGCATTCAATTTAG-GTCTTTTCAAAGT
**
50054 GGGAAAGTTCCCATCAAGTTTTCAAAGTGTTCAATTTAGGTCTTTTCAAAGT
1 GGGAAAGTTCCCATCAAGTTTTCAAAGCATTCAATTTAGGTCTTTTCAAAGT
*
50106 GGGAAAGTTCCCATCAAGTTTTCAAAACATTCAA
1 GGGAAAGTTCCCATCAAGTTTTCAAAGCATTCAA
50140 ACAACATTTT
Statistics
Matches: 80, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
52 79 0.99
53 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (52 bp):
GGGAAAGTTCCCATCAAGTTTTCAAAGCATTCAATTTAGGTCTTTTCAAAGT
Found at i:53385 original size:48 final size:48
Alignment explanation
Indices: 53314--53413 Score: 200
Period size: 48 Copynumber: 2.1 Consensus size: 48
53304 ATGCAAATGA
53314 TGAATGCAAAGTCCAATTATTAAAGTGAACTCGCGTAACCTGAGTTTT
1 TGAATGCAAAGTCCAATTATTAAAGTGAACTCGCGTAACCTGAGTTTT
53362 TGAATGCAAAGTCCAATTATTAAAGTGAACTCGCGTAACCTGAGTTTT
1 TGAATGCAAAGTCCAATTATTAAAGTGAACTCGCGTAACCTGAGTTTT
53410 TGAA
1 TGAA
53414 AACACTTCCC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 52 1.00
ACGTcount: A:0.34, C:0.16, G:0.19, T:0.31
Consensus pattern (48 bp):
TGAATGCAAAGTCCAATTATTAAAGTGAACTCGCGTAACCTGAGTTTT
Found at i:54684 original size:20 final size:20
Alignment explanation
Indices: 54656--54693 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
54646 CACCCAAGGA
*
54656 CTAATCTTTTTAATAAAAAG
1 CTAAACTTTTTAATAAAAAG
*
54676 CTAAACTTTTTAGTAAAA
1 CTAAACTTTTTAATAAAA
54694 TCACCACTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.45, C:0.11, G:0.05, T:0.39
Consensus pattern (20 bp):
CTAAACTTTTTAATAAAAAG
Found at i:57768 original size:49 final size:50
Alignment explanation
Indices: 57613--57831 Score: 370
Period size: 49 Copynumber: 4.4 Consensus size: 50
57603 TCCCGATCAA
*
57613 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAAGACCGTCTTCCGCTTAT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
*
57663 CCTTTGAACTGTCTTCCAATTCAGTCTTAAAAGGACCGTCTTCCGCTTAT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
* *
57713 CCTTTGAACTGTCTTCTAATTCAATCTT-AAATGACCGTCTTCCGCTTAT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
* *
57762 CCTTTGAACTGTCTTCCAATTCAATCTT-TAAGGACCGTCTTCCGCTTGT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
57811 CCTTTGAACTGTCTTCCAATT
1 CCTTTGAACTGTCTTCCAATT
57832 GGCTTCTGGA
Statistics
Matches: 160, Mismatches: 9, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
49 86 0.54
50 74 0.46
ACGTcount: A:0.22, C:0.28, G:0.12, T:0.38
Consensus pattern (50 bp):
CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
Found at i:58053 original size:64 final size:64
Alignment explanation
Indices: 57892--58440 Score: 732
Period size: 64 Copynumber: 8.6 Consensus size: 64
57882 TAAATGACCG
* * * * *
57892 TCTTCCGGTGTA-TCTCTTAACAAGATCGTCTTCCGATCAACTTTTGAAACCTT-TTCGAGAAAC
1 TCTTCTGGTGTACT-TCTTGACAAGATCGTCTTCCGATCATCTTCTGAAA-ATTGTT-GAGAAAC
*
57955 TA
63 CA
* * * *
57957 TCTTTTGGTGTACTTTTTAACAAGATCGTCTTCCGATCCA-CTTCTGAAAATTTTTGAGAAACCA
1 TCTTCTGGTGTACTTCTTGACAAGATCGTCTTCCGAT-CATCTTCTGAAAATTGTTGAGAAACCA
* * * * * * * *
58021 TCTTCTTGCGTACTTCTTGACAAGATCTTCTTCTGATTCA-CTCCTGAAAACTCTTGAGAAACCT
1 TCTTCTGGTGTACTTCTTGACAAGATCGTCTTCCGA-TCATCTTCTGAAAATTGTTGAGAAACCA
* * *
58085 TCTTTTGGTGTACTT-TTAACAAGATCGTCTTCCGATCAACTTCTGAAAATTGTTGAGAAACCA
1 TCTTCTGGTGTACTTCTTGACAAGATCGTCTTCCGATCATCTTCTGAAAATTGTTGAGAAACCA
* * * *
58148 TCTTCT-TTCGTACTTCTTAACAAGATCGTCTTCCGCTCATCTTCAGAAAATTGTTGAGAAACCA
1 TCTTCTGGT-GTACTTCTTGACAAGATCGTCTTCCGATCATCTTCTGAAAATTGTTGAGAAACCA
*
58212 TCTTCTGGTGTACTTATTGACAAGATCGTCTTCCGATCATCTTCTGAAAATTGTTGAGAAACCA
1 TCTTCTGGTGTACTTCTTGACAAGATCGTCTTCCGATCATCTTCTGAAAATTGTTGAGAAACCA
* *
58276 TCTTCTGGTGTACTTATTGACAAGATCGTCTTCCAATCATCTTCTGAAAATTGTTGAGAAACCA
1 TCTTCTGGTGTACTTCTTGACAAGATCGTCTTCCGATCATCTTCTGAAAATTGTTGAGAAACCA
* *
58340 TCTTCTGGTGTACTTCTTGACAAGATCATCTTCCGCTCATCTTCTGAAAATTGTTGAGAAACCA
1 TCTTCTGGTGTACTTCTTGACAAGATCGTCTTCCGATCATCTTCTGAAAATTGTTGAGAAACCA
58404 TCTTCTGGTGTACTTCTTGACAAGATCGTCTTCCGAT
1 TCTTCTGGTGTACTTCTTGACAAGATCGTCTTCCGAT
58441 GTATTCATTA
Statistics
Matches: 432, Mismatches: 44, Indels: 17
0.88 0.09 0.03
Matches are distributed among these distances:
62 4 0.01
63 48 0.11
64 333 0.77
65 44 0.10
66 3 0.01
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.37
Consensus pattern (64 bp):
TCTTCTGGTGTACTTCTTGACAAGATCGTCTTCCGATCATCTTCTGAAAATTGTTGAGAAACCA
Found at i:60946 original size:18 final size:19
Alignment explanation
Indices: 60925--60960 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
60915 TAGAAATTAT
60925 TCTTCAA-TGGTCTTCAAA
1 TCTTCAATTGGTCTTCAAA
*
60943 TCTTCAATTTGTCTTCAA
1 TCTTCAATTGGTCTTCAA
60961 TAAGTCTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 7 0.44
19 9 0.56
ACGTcount: A:0.25, C:0.22, G:0.08, T:0.44
Consensus pattern (19 bp):
TCTTCAATTGGTCTTCAAA
Found at i:68413 original size:27 final size:27
Alignment explanation
Indices: 68383--68466 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
68373 CCTTTGAACT
68383 GTCTTCCAATTCAATCTTAAAAGGACC
1 GTCTTCCAATTCAATCTTAAAAGGACC
* * * *
68410 GTCTTCCACTT--ATCCTT---TGAACT
1 GTCTTCCAATTCAAT-CTTAAAAGGACC
*
68433 GTCTTCCAATTCAGTCTTAAAAGGACC
1 GTCTTCCAATTCAATCTTAAAAGGACC
68460 GTCTTCC
1 GTCTTCC
68467 GCTTATCCTT
Statistics
Matches: 42, Mismatches: 9, Indels: 12
0.67 0.14 0.19
Matches are distributed among these distances:
23 13 0.31
24 3 0.07
25 3 0.07
26 3 0.07
27 20 0.48
ACGTcount: A:0.25, C:0.29, G:0.12, T:0.35
Consensus pattern (27 bp):
GTCTTCCAATTCAATCTTAAAAGGACC
Found at i:68524 original size:49 final size:50
Alignment explanation
Indices: 68373--68591 Score: 397
Period size: 49 Copynumber: 4.4 Consensus size: 50
68363 TCCCGATCAA
*
68373 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCACTTAT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
*
68423 CCTTTGAACTGTCTTCCAATTCAGTCTTAAAAGGACCGTCTTCCGCTTAT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
*
68473 CCTTTGAACTGTCTTCCAATTCAATCTT-AAAGGACTGTCTTCCGCTTAT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
68522 CCTTTGAACTGTCTTCCAATTCAATCTT-AAAGGACCGTCTTCCGCTTAT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
68571 CCTTTGAACTGTCTTCCAATT
1 CCTTTGAACTGTCTTCCAATT
68592 GGCTTCTGGA
Statistics
Matches: 164, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
49 89 0.54
50 75 0.46
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37
Consensus pattern (50 bp):
CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCGCTTAT
Found at i:68538 original size:99 final size:99
Alignment explanation
Indices: 68373--68591 Score: 395
Period size: 99 Copynumber: 2.2 Consensus size: 99
68363 TCCCGATCAA
68373 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCACTTATCCTTTGAACTGTCTT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCACTTATCCTTTGAACTGTCTT
*
68438 CCAATTCAGTCTTAAAAGGACCGTCTTCCGCTTAT
66 CCAATTCAATCTT-AAAGGACCGTCTTCCGCTTAT
* *
68473 CCTTTGAACTGTCTTCCAATTCAATCTT-AAAGGACTGTCTTCCGCTTATCCTTTGAACTGTCTT
1 CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCACTTATCCTTTGAACTGTCTT
68537 CCAATTCAATCTTAAAGGACCGTCTTCCGCTTAT
66 CCAATTCAATCTTAAAGGACCGTCTTCCGCTTAT
68571 CCTTTGAACTGTCTTCCAATT
1 CCTTTGAACTGTCTTCCAATT
68592 GGCTTCTGGA
Statistics
Matches: 116, Mismatches: 3, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
98 42 0.36
99 46 0.40
100 28 0.24
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.37
Consensus pattern (99 bp):
CCTTTGAACTGTCTTCCAATTCAATCTTAAAAGGACCGTCTTCCACTTATCCTTTGAACTGTCTT
CCAATTCAATCTTAAAGGACCGTCTTCCGCTTAT
Found at i:68813 original size:64 final size:63
Alignment explanation
Indices: 68666--69150 Score: 571
Period size: 64 Copynumber: 7.6 Consensus size: 63
68656 CCAGTGTATC
* *
68666 TCTTAACAAGATCGTCTTCCGATCAACTTCTGAAACCTT-TTCGAGAAACTATCTT-TTGGTGTA
1 TCTTAACAAGATCGTCTTCCGATC-ACTTCTGAAA-ATTGTT-GAGAAACCATCTTCTT-GTGTA
68729 CT
62 CT
* * *
68731 TTTTAACAAGATCGTCTTCCGATCCACTTCTGAAAATTTTTGAGAAACCATCTTCTTGCGTACT
1 TCTTAACAAGATCGTCTTCCGAT-CACTTCTGAAAATTGTTGAGAAACCATCTTCTTGTGTACT
* * * * * *
68795 TCTTGACAAGATCTTCTTCTGATTCACTCCTGAAAACTCTTGAGAAACCATCTT-TTGGTGTACT
1 TCTTAACAAGATCGTCTTCCGA-TCACTTCTGAAAATTGTTGAGAAACCATCTTCTT-GTGTACT
* * *
68859 TTTTAACAAGATCGTATTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTTGCGTACT
1 TCTTAACAAGATCGTCTTCCGATC-ACTTCTGAAAATTGTTGAGAAACCATCTTCTTGTGTACT
* * * * *
68923 TCTTAACAAGATTGTGTTCCGCTCATCTTCAGAAAATTGTTGAGAAACCATCTTCTGGTGTACT
1 TCTTAACAAGATCGTCTTCCGATCA-CTTCTGAAAATTGTTGAGAAACCATCTTCTTGTGTACT
* * * *
68987 TATTGACAAGATCGTCTTCCGATCATCTTTTGAAAATTGTTGAGAAACCATCTTCTGGTGTACT
1 TCTTAACAAGATCGTCTTCCGATCA-CTTCTGAAAATTGTTGAGAAACCATCTTCTTGTGTACT
* * * *
69051 TCTTGAGAAGATCGTCTTCCGCTCATCTTCTGAAAATTGTTGAGAAACCATCTTCTGGTGTACT
1 TCTTAACAAGATCGTCTTCCGATCA-CTTCTGAAAATTGTTGAGAAACCATCTTCTTGTGTACT
* * *
69115 TCTTGACAAGATCGTCTTCAGATTCACTCCTGAAAA
1 TCTTAACAAGATCGTCTTCCGA-TCACTTCTGAAAA
69151 CTCTTTCTAA
Statistics
Matches: 368, Mismatches: 43, Indels: 19
0.86 0.10 0.04
Matches are distributed among these distances:
63 5 0.01
64 320 0.87
65 42 0.11
66 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (63 bp):
TCTTAACAAGATCGTCTTCCGATCACTTCTGAAAATTGTTGAGAAACCATCTTCTTGTGTACT
Found at i:68860 original size:128 final size:128
Alignment explanation
Indices: 68666--69150 Score: 632
Period size: 128 Copynumber: 3.8 Consensus size: 128
68656 CCAGTGTATC
* * * * * *
68666 TCTTAACAAGATCGTCTTCCGATCAACTTCTGAAACCTTTTCGAGAAACTATCTTTTGGTGTACT
1 TCTTAACAAGATCGTCTTCCGCTCATCTTCTGAAAACTGTT-GAGAAACCATCTTCTGGTGTACT
*
68731 TTTTAACAAGATCGTCTTCCGATCCACTTCTGAAAATTTTTGAGAAACCATCTTCTTGCGTACT
65 TTTTAACAAGATCGTCTTCCGATCCACTTCTGAAAATTGTTGAGAAACCATCTTCTTGCGTACT
* * * * * * *
68795 TCTTGACAAGATCTTCTTCTGATTCA-CTCCTGAAAACTCTTGAGAAACCATCTTTTGGTGTACT
1 TCTTAACAAGATCGTCTTCCG-CTCATCTTCTGAAAACTGTTGAGAAACCATCTTCTGGTGTACT
* *
68859 TTTTAACAAGATCGTATTCCGATCAACTTCTGAAAATTGTTGAGAAACCATCTTCTTGCGTACT
65 TTTTAACAAGATCGTCTTCCGATCCACTTCTGAAAATTGTTGAGAAACCATCTTCTTGCGTACT
* * * *
68923 TCTTAACAAGATTGTGTTCCGCTCATCTTCAGAAAATTGTTGAGAAACCATCTTCTGGTGTACTT
1 TCTTAACAAGATCGTCTTCCGCTCATCTTCTGAAAACTGTTGAGAAACCATCTTCTGGTGTACTT
* * * * *
68988 ATTGACAAGATCGTCTTCCGAT-CATCTTTTGAAAATTGTTGAGAAACCATCTTCTGGTGTACT
66 TTTAACAAGATCGTCTTCCGATCCA-CTTCTGAAAATTGTTGAGAAACCATCTTCTTGCGTACT
* * *
69051 TCTTGAGAAGATCGTCTTCCGCTCATCTTCTGAAAATTGTTGAGAAACCATCTTCTGGTGTACTT
1 TCTTAACAAGATCGTCTTCCGCTCATCTTCTGAAAACTGTTGAGAAACCATCTTCTGGTGTACTT
* * * * *
69116 CTTGACAAGATCGTCTTCAGATTCACTCCTGAAAA
66 TTTAACAAGATCGTCTTCCGATCCACTTCTGAAAA
69151 CTCTTTCTAA
Statistics
Matches: 314, Mismatches: 38, Indels: 9
0.87 0.11 0.02
Matches are distributed among these distances:
127 4 0.01
128 275 0.88
129 32 0.10
130 3 0.01
ACGTcount: A:0.27, C:0.22, G:0.15, T:0.36
Consensus pattern (128 bp):
TCTTAACAAGATCGTCTTCCGCTCATCTTCTGAAAACTGTTGAGAAACCATCTTCTGGTGTACTT
TTTAACAAGATCGTCTTCCGATCCACTTCTGAAAATTGTTGAGAAACCATCTTCTTGCGTACT
Found at i:72096 original size:14 final size:14
Alignment explanation
Indices: 72054--72114 Score: 70
Period size: 15 Copynumber: 4.3 Consensus size: 14
72044 TAAAAGACTC
72054 AAAACCTTTT-TTG
1 AAAACCTTTTCTTG
*
72067 AAAACCTATTTTTTG
1 AAAACCT-TTTCTTG
72082 AAAACCTTTTCTTG
1 AAAACCTTTTCTTG
* *
72096 AAAACAATTTCCTTG
1 AAAAC-CTTTTCTTG
72111 AAAA
1 AAAA
72115 ACGTCTCTTG
Statistics
Matches: 42, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
13 7 0.17
14 14 0.33
15 21 0.50
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (14 bp):
AAAACCTTTTCTTG
Found at i:72111 original size:29 final size:28
Alignment explanation
Indices: 72054--72114 Score: 79
Period size: 28 Copynumber: 2.1 Consensus size: 28
72044 TAAAAGACTC
* *
72054 AAAACCTTTTTTGAAAACCTATTTTTTG
1 AAAACCTTTTTTGAAAACCAATTTCTTG
72082 AAAACCTTTTCTTGAAAA-CAATTTCCTTG
1 AAAACCTTTT-TTGAAAACCAATTT-CTTG
72111 AAAA
1 AAAA
72115 ACGTCTCTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
28 15 0.52
29 14 0.48
ACGTcount: A:0.38, C:0.16, G:0.07, T:0.39
Consensus pattern (28 bp):
AAAACCTTTTTTGAAAACCAATTTCTTG
Done.