Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017265.1 Corchorus olitorius cultivar O-4 contig17298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91721

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2001--2049
21
2.4
20
83
6
62
34
2
10
53
1.47
4119--4155
18
2.1
18
100
0
74
43
10
16
29
1.82
4804--4853
2
25.0
2
91
0
82
50
0
4
46
1.20
5951--5987
8
4.6
8
100
0
74
48
13
10
27
1.75
6489--6517
2
14.5
2
100
0
58
48
0
0
51
1.00
8146--8292
75
2.0
75
95
2
269
30
16
14
38
1.89
9788--9875
43
2.0
43
97
0
167
31
38
4
25
1.76
9853--9911
16
3.7
15
81
16
66
28
23
13
33
1.93
10956--11120
84
2.0
84
90
0
258
34
14
13
36
1.86
12789--12871
42
2.0
43
85
2
114
20
33
18
27
1.96
12831--12910
29
2.7
29
88
1
115
21
32
18
27
1.97
13052--13227
29
5.8
29
75
17
153
6
25
19
48
1.73
13108--13197
18
5.4
18
70
17
86
7
24
18
48
1.74
13079--13222
47
3.1
46
88
2
216
6
26
19
47
1.74
18023--18047
12
2.1
12
100
0
50
52
40
0
8
1.31
18080--18189
39
2.9
38
82
8
134
21
30
19
28
1.97
30307--30850
8
71.2
8
72
14
348
29
22
3
44
1.70
30307--30850
22
22.8
24
76
12
307
29
22
3
44
1.70
30310--30850
58
8.9
62
71
16
276
29
22
3
43
1.70
35950--36179
43
5.5
42
85
4
302
21
9
26
42
1.83
35950--36179
84
2.7
85
93
2
383
21
9
26
42
1.83
37187--37221
17
2.0
18
88
5
54
14
2
28
54
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40497--40538
17
2.5
17
77
11
50
23
16
16
42
1.88
40854--41075
102
2.2
99
78
7
227
44
10
11
34
1.74
41464--41522
16
3.6
16
76
2
55
55
32
10
1
1.43
41460--41551
32
2.9
32
88
0
130
51
32
9
6
1.61
41471--41551
16
5.1
15
75
11
72
51
30
11
6
1.62
42068--42150
39
2.1
40
95
2
150
30
15
24
30
1.96
42167--42223
30
1.9
30
92
0
96
35
17
12
35
1.87
42286--42379
46
2.0
46
100
0
188
45
21
12
20
1.84
42294--42368
23
3.3
23
64
14
64
45
21
13
20
1.84
43647--43717
35
2.0
35
91
5
117
29
23
25
21
1.99
49197--49326
65
2.0
65
100
0
260
35
7
26
30
1.84
51375--51401
12
2.2
12
100
0
54
33
7
33
25
1.84
55502--55527
2
13.0
2
100
0
52
50
50
0
0
1.00
60272--60319
22
2.2
22
100
0
96
45
10
20
22
1.81
60628--60689
31
2.0
30
87
9
90
17
4
16
61
1.51
64250--64307
3
19.3
3
100
0
116
67
0
0
32
0.91
65969--66011
19
2.3
19
95
0
77
18
13
16
51
1.77
77966--78014
17
2.8
17
93
3
80
18
10
10
61
1.55
87747--87804
10
6.4
9
74
21
50
10
10
3
75
1.15
87753--87790
16
2.3
17
86
4
51
7
7
2
81
0.96
88931--88979
21
2.3
21
82
6
55
40
16
28
14
1.87

Tables:   1

The End!