Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017267.1 Corchorus olitorius cultivar O-4 contig17300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  17281

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--43
2
21.0
2
95
0
75
50
0
2
47
1.14
2064--2099
18
1.9
18
88
5
54
38
2
22
36
1.69
2689--2714
11
2.4
11
100
0
52
7
15
7
69
1.35
3857--3955
34
3.2
33
78
15
104
28
6
15
50
1.67
3898--3951
27
1.9
28
88
7
83
31
7
12
48
1.69
3949--4003
27
2.0
28
89
3
85
40
5
10
43
1.63
3949--4003
28
2.0
28
86
10
69
40
5
10
43
1.63
5893--5932
6
6.7
6
88
0
62
2
12
2
82
0.87
16052--16116
34
1.9
33
81
12
78
23
7
15
53
1.67
17017--17041
13
1.9
13
100
0
50
16
12
48
24
1.79

Tables:   1

The End!